Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9571g00083 ATGGAAGACACCTCTCTCTGCTGTGAACAATTGCCGGATGGGGAATGCATTGAGGTTCAGAAAGACGAAGATGGCGCGCTGATTGAATTGGATTGTCAGAATGGTTTTCCTGAGGGGAGAAAGGAATTTGTTGCACCTGCTGTTGGAATGGAGTTTGAGTCATACGATGATGCTTACAATTATTATATTTGCTATGCCAAGGAGGTGGGGTTTCGTGTACGGGTGAAGAATTCGTGGTTCAAGCGGAATAGCAGAGAGAAGTATGGTGCAGTGCTTTGCTGTAGCAGCCAGGGTTTCAAGAGAATAAAGGATGTGAATCATTTGAGGAAGGAGACGAGAACTGGTTGTCCTGCAATGATAAGGATGAGATTGGTGGAGTCACAGAGATGGCGGGTGCTTGAAGTTATGCTTGAACATAACCACATGTTGGGTGCTAAGATACAGAGGTTGGTTAAGAAGATAGGAACTGGGTTGAAGAGGAAGTCGTTGCCTAGCTCTGATGCCGAGGGGCAGACGATTAAGTTATATCGTGCACTTGTGATTGACGCGGGAGGTGATGGAATTTCAAACTCCATTGCTAGAGAAGACAGAAGTTTCTGTGAGTTTTCTAATAAGATGAACCTTAGAAAAGGTGACTCACAGGCCATTTATAATTTCCTCTGCCGAATGCAATTGACTAATCCAAATTTCTTTTACTTGATGGATTTCAATGACGAAGGGCACTTGAGGAATGCATTTTGGGTTGATGCTAGGTCCAGGGCTGCGTGTGGTTATTTTGCCGATGTTATTTATTTTGACAACAGTTACTTGTCAAACAAATATGAAATCCAGTTGGTGACTTTTGTTGGAATAAATCACCATGGTCATTCGGTGTTATTAGGATGTGGTCTCCTTGCAAGTGAAACAACAGAGTCTTATATATGGTTGTTTAGGACATGGGTTAAATGTATGGCGGGATGTTCTCCCCAAACTATTATTACTGACAGGTGCAAGGCTTTGCAGAGAGCAATTGTAGAAGTTTTTCCTAGATGTCGTCATTGTTTTGGCTTGTCATTAATTATGAAAAAGATACCAGAAAAATTGGGAGGTTTGCACAACTATGATGCACTCAGGAAAGCACTGATTAAAGCAGTTTATGAAACATTGAAAGTGATTGAGTTTGAAGCAGCATGGGGATTTATGATTCAACATTTTGGAGTTAGTGATCATGAGTGGCTTCGTTCTCTGTATGAAGATCGAGTTCATTGGGCTCCAGTATTTTTGAAGGACACTTTTTTTGCTGGAATGTCTGCAGCTCGCCCTGGTGAGAACATTACTCCTTTTTTTGATAGATACGTGCACAAACAGACTCCGCTGAAGGAGTTTCTTGATAAGTATGAATTAGCTCTTCACAAGAAGTACAAAGAAGAGTCTTTTGCAGATATTCAATCAAGGAGCTCAAGCCCCTTGCTGAAAACTAGATGTTCCTTTGAATTGCAGCTCTCCAGATTGTACACTAGAGAAATGTTCATGAAATTCCAGTTAGAAGTGGAAGAAGTATATTCTTGTTTTGGTACAACACAGTTACATGTGGATGGTCCCATCATAATTTTCTTGGTCAAGGAGCGTGTTTTGATTGAGGGAAACCGACGGGAGATACGGGATTTTGAAGTTTTGTACAGTAGGACCGTAGGTGAAGTTCGTTGCATCTGTAGTTGCTTTAATTTTTATGGATATCTTTGTCGGCATGCACTGTGTGTGCTCAATTTTAATGGGGTTGAAGAGATACCTCACAGATACATTCTTTCGCGATGGAAGAAAGATTACAAGCGTCTTTATGTTCCTGATCACAGCTCTGGTACCGCTGATGATACTGACCGCATTCAATGGTCTAATCGGTTATTTAGAAGTGCCTTGCAAGTTGTTGAGGAGGGTATACTTTCTCTAGATCATTACAATGTAGCGTTACAATCTTTAGAAGAATCATTGAGTAAGGTTCATGATGTAGAGCAGAGACAAGAGTGGCTTCCTCCAAGACTGAACTCTCCCGTAAGCTCACTCCCTCAGCTCACCCTTTCTCCGGAGACCCAAGGTCTCTTACTCTCTCCGCAGGCTCACCGCCGCGTCTGTCTAATTGGCCGCCGCGACCCAGCCTCTGTTCCAGTCCACACCACTGCTTCCTCCTCCGTGGCGTCGCGCACCGCCAGAGCCCGTGTCGGCCCAAGCTCCAATCAGCTCCTTCTCTTCTCCACCTCTTCGCGTGCGAGAGAGGGACTCTCACCCCTCCGTGCCATGCCGACACCACCCCCAGGGCATGCGAATGGGGCATCAATGGTGATTTTGAGGGATGATAGGTGTAGTGGAGGGTTATGTTTGTTGAGGCTGTTACGGGTGAGCACAGTGTGGAGAATCCAAACGGATGATAGCGACTGGCGGGGGAAAGGAACGAAGGTTGGGAACGGATCCGGTGGTATTTGGGGTTTGCCGACGACGCAAGAGGTGGTGGCACGGGTGGCTGGGTCGACGGTGAAAAGAGAAGGAGAGAGACCAGAAGCAACTTGCGGCGGTCTGCTTGGAGGAGGCGGCGACCAGAACTGCTCCGACGGGCGTGAACGACATCGCCGGCAGTGGTCCTGGTGGTGCTTAGCGTCGCCGGCGGCTGGGACGTGGGTGATAACAGAAGGAAGAACGCAGTTGGCAGTGAAGAGAAGAGAGCAGAGAAACAGCATTTCGTTCACTGCCACTCTCTCTTTTCTTCTCTTATCTTCTCTGTTACTAACTCATGTAAACTCTCTGGCTATGACTGACGATACCATGTGTTCTCCAAGCGACAAGGACTTGTCGCTGAGTCCTAATCTTGATATCACGATAGATGATGGCTCTCCGAACAGTGAACAACTTCTTGACATAGTTGATGAGGGCAACGAGCTTGACAATGAATGTGGACAATTGTTTGAGATTGATGGAAATGGAAGTGAAAATGGGAGGGATGAAACCACAGTAGTTGATAGTCACAGTGGAGAATCTCATGGGAAAGACTGCCCCCCACCAGTTGTGGGAATGGAGTTTGACACCTATGATGATGCCTACAACTATTACAATACCTATGCCAAGGAAATTGGATTTGCTACTCGAGTTAAATCTTCTTGGACGAAACGTAACAGCAAAGAGAAGCGTGGTGCGGTTCTGTGCTGCAACTGTGAGGGTTTCAAAACAACCAAAGAAGCAAATAGTCACAGGAAAGAAACAAGAACGGGCTGTCTAGCAATGATTAGATTGAGATTAGTGGAATCTAACAGGTGGAGAGTCGATGAAGTCAAGCTTGAGCATAACCATTCATTTGATCCTGAAAGAGCACAAAACTCTAAATCACATAAGAGGATGGACAGTAGGGCAAAAAGAAAAGTTGAGCCAACTCTAGACGTTGAAGTAAGAACAATCAAGTTATATCGAATGCCTGTTGCAGATGCATCAGGTTATGGAAGCTCAAATTCCACTGAAGGTGCAACTAACAACCACATTAATTGTTCCAAGCGTTTGAAACTTAAAAAAGGTGATCCGGAGCTGATTTCAAATTACTTCTGCCGCATTCAATTGACTAATCCTAACTTTTTCTATGTCATGGATCTGAATGATGATGGACAACTGAGGAATGTATTTTGGATTGACTCTAGATCTAGGGCTGCTTATAGTTATTTTGGTGATGTGGTTGCATTTGACTCAACGTGTTTGTCAAACAATTATGAGATTCCTCTTGTTGCATTTGTTGGTGTTAATCACCATGGCAAATCTATTTTGCTAGGATGTGGTCTGCTTGCAGATGAGACATTTGAAACATATATTTGGTTATTTAGGGCATGGCTCACATGTATGACTGGTCGCCCTCCACAAACTATGATCACAAACCAGTGTAAGGCCTTGCAAAGTGCAATTGCTGAGGTTTTCCCGCGAGCTCACCATAGAATTTGTCTATCGCAAGTCATGCAGAGCATTCTTGGGTGTTTTGTGCAGTTTCAGGAGTACGAGGCATTTCAAATTGAACTTACTAAAGTCATATATGACTCTAAAACAGTAGACGAGTTTGAAAGGGCTTGGGATGATCTAACCCAGCATTTTGGAATAAGAAATCACGAAAAGATCCTAACCTTGCATGAGGAACGAGAGCATTGGGCTCCAGTGTACTCCAAAGACACATTTTTTGCTGGAATATCTGATTATGAAAAGGGTGAGTCTGTGGTTCCCTTTTTCAAAGGTCATGTGCATCAACAAACTTCTTTGAAAGAATTTTTTGAGATTTATGAATTAGTTCAGCAGAAAAAACATAAAACCGAAGTTCTTGATGATCTTGAGTCATGCGATTTGAGCTCAATACTGAAGACAAGATGCTACTACGAGTTGCAAATCTCTAAATTGTACACAAATGCTGTATTTAGGAAGTTTCAAGATGAGGTGGTGATGATACCCTCTTGTTTCAGCATCACGCAGACTCAAACTAGTGGCTCTATGGTGACGTACATGGTAAAAGAACGAGAAGTGGAAGACCCTGCAACAGATGCTAGGCATTTTGAAGTCATGTATGATAAAGCTGGAACAGAAGTGCGCTGCATTTGTAGTTGCTTTAATTTCAAGGGCTACCTCTGCAGACATGCCTTGTATATCCTTAATTACAATGGTGTGGAGGAAATTCCATGTCAATACATTTTGTCAAGATGGAGGAAAGATTTTAAGCGTTTGTATGTACCTCATCTTAGTGCTGATAATGTTGATATTAGCAACCCAGTTCAGTGTTTTGATCATTTGTACAAACGTGCCATGCGAGTTGTTGAAGAGGGGATGATGTCCCAAGATCATTATATGGTTTCTTGGCAAGCATTTAAAGAATCTCTGAATAAGATTCGCCTTGTAGCAGACAAGATTGAATAA 4902 0.4341 MEDTSLCCEQLPDGECIEVQKDEDGALIELDCQNGFPEGRKEFVAPAVGMEFESYDDAYNYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVNHLRKETRTGCPAMIRMRLVESQRWRVLEVMLEHNHMLGAKIQRLVKKIGTGLKRKSLPSSDAEGQTIKLYRALVIDAGGDGISNSIAREDRSFCEFSNKMNLRKGDSQAIYNFLCRMQLTNPNFFYLMDFNDEGHLRNAFWVDARSRAACGYFADVIYFDNSYLSNKYEIQLVTFVGINHHGHSVLLGCGLLASETTESYIWLFRTWVKCMAGCSPQTIITDRCKALQRAIVEVFPRCRHCFGLSLIMKKIPEKLGGLHNYDALRKALIKAVYETLKVIEFEAAWGFMIQHFGVSDHEWLRSLYEDRVHWAPVFLKDTFFAGMSAARPGENITPFFDRYVHKQTPLKEFLDKYELALHKKYKEESFADIQSRSSSPLLKTRCSFELQLSRLYTREMFMKFQLEVEEVYSCFGTTQLHVDGPIIIFLVKERVLIEGNRREIRDFEVLYSRTVGEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPHRYILSRWKKDYKRLYVPDHSSGTADDTDRIQWSNRLFRSALQVVEEGILSLDHYNVALQSLEESLSKVHDVEQRQEWLPPRLNSPVSSLPQLTLSPETQGLLLSPQAHRRVCLIGRRDPASVPVHTTASSSVASRTARARVGPSSNQLLLFSTSSRAREGLSPLRAMPTPPPGHANGASMVILRDDRCSGGLCLLRLLRVSTVWRIQTDDSDWRGKGTKVGNGSGGIWGLPTTQEVVARVAGSTVKREGERPEATCGGLLGGGGDQNCSDGRERHRRQWSWWCLASPAAGTWVITEGRTQLAVKRREQRNSISFTATLSFLLLSSLLLTHVNSLAMTDDTMCSPSDKDLSLSPNLDITIDDGSPNSEQLLDIVDEGNELDNECGQLFEIDGNGSENGRDETTVVDSHSGESHGKDCPPPVVGMEFDTYDDAYNYYNTYAKEIGFATRVKSSWTKRNSKEKRGAVLCCNCEGFKTTKEANSHRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHSFDPERAQNSKSHKRMDSRAKRKVEPTLDVEVRTIKLYRMPVADASGYGSSNSTEGATNNHINCSKRLKLKKGDPELISNYFCRIQLTNPNFFYVMDLNDDGQLRNVFWIDSRSRAAYSYFGDVVAFDSTCLSNNYEIPLVAFVGVNHHGKSILLGCGLLADETFETYIWLFRAWLTCMTGRPPQTMITNQCKALQSAIAEVFPRAHHRICLSQVMQSILGCFVQFQEYEAFQIELTKVIYDSKTVDEFERAWDDLTQHFGIRNHEKILTLHEEREHWAPVYSKDTFFAGISDYEKGESVVPFFKGHVHQQTSLKEFFEIYELVQQKKHKTEVLDDLESCDLSSILKTRCYYELQISKLYTNAVFRKFQDEVVMIPSCFSITQTQTSGSMVTYMVKEREVEDPATDARHFEVMYDKAGTEVRCICSCFNFKGYLCRHALYILNYNGVEEIPCQYILSRWRKDFKRLYVPHLSADNVDISNPVQCFDHLYKRAMRVVEEGMMSQDHYMVSWQAFKESLNKIRLVADKIE 1633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9571g00083 1633 Pfam SWIM zinc finger 1528 1544 IPR007527 GO:0008270
Vium9571g00083 1633 Pfam SWIM zinc finger 536 581 IPR007527 GO:0008270
Vium9571g00083 1633 SMART 26again6 560 587 IPR006564 GO:0008270
Vium9571g00083 1633 SMART 26again6 1526 1553 IPR006564 GO:0008270
Vium9571g00083 1633 ProSiteProfiles Zinc finger SWIM-type profile. 549 585 IPR007527 GO:0008270
Vium9571g00083 1633 ProSiteProfiles Zinc finger SWIM-type profile. 1515 1551 IPR007527 GO:0008270
Vium9571g00083 1633 MobiDBLite consensus disorder prediction 979 1009 - -
Vium9571g00083 1633 Pfam MULE transposase domain 262 356 IPR018289 -
Vium9571g00083 1633 Pfam MULE transposase domain 1229 1322 IPR018289 -
Vium9571g00083 1633 Pfam FAR1 DNA-binding domain 60 143 IPR004330 -
Vium9571g00083 1633 Pfam FAR1 DNA-binding domain 1024 1108 IPR004330 -
Vium9571g00083 1633 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 997 1626 IPR031052 GO:0006355
Vium9571g00083 1633 MobiDBLite consensus disorder prediction 1105 1128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9571g00083 Vium-Chr9571 422736 432113 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium9571g00083 MULE 8.9e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9571g00083 - K17604 gmx:100796448 1358.97