Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9571g00077 ATGGGTGAAAGAATACTGCTACCACTGTTGCTTTTCTTCAACTGTTTGCTCAGTGCAGTGGCACAAGATATTACCAAAGATCTTGAAGTTCTGAAGTCTCTGAGTGAGTCTTGGCAAGGTCAAATTCAAAACTGGGAGGGTTCAGATCCTTGCAGTTGGAATGGCATTAACTGCAGAAACTCACGAGTGGTTTCCATATCGTTAACAGATATTGGTTTGACCGGCCAGCTTTCTGGAGATATAGGATCACTTTCTGAATTGGATAATCTGGATCTCTCAAACAATAGGGGCCTGACAGGACCACTTCCACGAGAAATTGGAAACTTGAAGAAGCTAACGAAACTAACTCTTGTTGGTTGTGGTTTTACTGGTCGTATTCCAGATGAAATAGGATCTCTGCAACAACTTGAAGTCTTATCTTTAAACTCCAACAATTTTGCTGGATCAATTCCACCTTCTATTGGCAATCTGTCAAATCTTACTTGGCTAGATTTAGCTGACAACCAGCTTGATGGATCCATCCCTGTATCTAGTGGCACTACCCCTGGTCTTGATATGTTACACAATGCATTGCACTTTCATCTTGGGAAGAATAGGCTTTCAGGACAAATTCCTCCGAAACTTTTTAGCTCGAAAATGACTCTGATACATGTGATTTTTCACAGCAATCTACTAGTTGGCAGCATTCCTGAAACGCTTGGGCTAGTTACGAGTTTGACAGTGGTGCGCTTTGAAAATAATTCACTGAATGGACATGTGCCTCAGAGCTTCAACAACCTTATCAATGTCACAGACCTGTTGTTGTCCAACAATAAGCTGGAAGGTGCGATGCCAAACCTTACTGGGATGAACTCACTAAGATACTTGGATCTGAGCAATAATAGCTTTGAAAAGTCAAACGTTCCACTTTGGCTTTCGAATCTGAAGAATTTAGCAACCTTACAAATGGAGAATTTGTACCTAGTTGGAACCATTCCGAACTTTTTATTTAGCCTTGGCAATTTACAGAATGTTGTGCTGAAAGACAACCACCTTGGTGGAACCTTGGATATTGGCACCAACTATAGCAGACAACTGCGAGTTATAGATTTGAGGTCAAATTCAATTCAGGACTATAAGCAATCAAATGATCCCCCACTTATCAGGATAATGCTCGCACATAACCCGATTTGCACTGAAAATGGAGCAGAAACTGTGAAGGATTACTGCACCAACCTGGATATCTTCGATACAAAGCAACAAAATAATTGTGAACATGGTAGCTGCAGCCCAGATCAGACTCTCAGCCCCAACTGCAAATGTGGATATCCATATACAGGAACATTGACTTGCAGAGCCCCTTCCTATTTTGACTGGAGTAATACAGCAAACCTGGAGGAAATTCTACTGAAGGAATTTCAATCTCATAATCTACCTGTTGATTCAGTTTCTTTAACCCTTTCAACTAAAGATCCATTTCGAGGTTTTGAGTTTATCATACAAATTTTCCCACTGGACCAAAATCATTTCAGCCAACAAGAGAAATCTAGTATAAGCTTATTGCTTGGCAACCGAAGTGCATATAGTGCATTTGATTTTATTGCAGGAAACCAGGTTGAAGGACCTAAGCAGTCAAGTAATTCATCAAGCACTGCAATAATTATTGGAGTAGCAATTGGAGGTTCTTCTCTTTTGCTAGTGTTATTAGCCCTGGCTGGATTTTATGCTTTCCGCCAGAGGAGAAGAGCAGAAAGAGCAATATCTCGAAGCAATCCTTTCGGTAAATAATTCTAAACTCAGTTCCTGAACAGCCAAATGGACTTCCGTGAATTTATATTAATTGACGCAGAAAAAAAAATTGCAGGAAACTGGGATCCAAGTAAAAGCAATTGCGGCACCCCTCAGTTAAAAGCACCTAGGCAGTTCTCTTTTAAGGAAATTCAGAAATACACAAACAACTTCTCACAAGCCAATGATGTTGGATCAGGGGGTTATGGAAAGGTTTACCGGGGAACTCTTCCCACAGGGGAAGTTGTAGCCATAAAACGAGCTCAAAAAGAGTCAAAGCAGGGAGCACAAGAATTCAAAGCTGAAATTGAACTCCTTTCCCGGGTCCATCACATAAATCTGGTTAGCCTTGTGGGATTCTGCTTTGAACAGGAAGAACAAATGCTGGTTTACGAGTTCATTCCTAATGGAACTTTGAAGGATGCTCTCACATGGAAACGTGGAATCGCATTGAGCTGGAGCAGAAGGCTGAAAGTAGCCCTTGGTACTGCCAGGGGTTTGGCTTATCTTCATGAACATGCTGATCCCCCTATTATACACAGGGACATCAAGTCAAACAACATCTTGCTAGATGAGAACTATAATGCTAAAGTTTCTGATTTCGGTCTCTCCAAGTCTATCTTAGATGATGATAAAGATCATGTTACCACTCAAGTCAAAGGAACAATGGGCTACTTGGATCCAGATTATTATACTAGTCAGCGGTTGACTGAAAAGAGTGATGTCTATAGTTTTGGAGTGCTAATGCTGGAGTTAATTACTGCAAAAAGGCCAATAGAACGAGGGAAATACATTGTGAAAGTGGTCAGGAATACAATAGATAAGACAAAAGACTTGTATGGTCTTCACGAAACTATTGATCCAGCCCTTTGTTCAGGATCAACACTGGAGGGTTTTGAGAAGTTTGTTGACCTTGCAATGGAGTGTCTTCAAGATTCAGGAGTCGACAGGCCCACAATGAGTGAAGTGGTTAAAGAAATTGAAGAAATGTTGCGATCTCTTGGTTTGAACCTAACATCTGAATTAGCAGCATCCTCTTCATCCAGTCATAGATTTCAGGTGAGTATAGTGAGTTCCCAACTAGACCACCTTTACAGCAATGAATCTATTGGTTCAAGTGCAGAAAATTTATATTCAACAAGTGAGCACAGTTAA 2922 0.4076 MGERILLPLLLFFNCLLSAVAQDITKDLEVLKSLSESWQGQIQNWEGSDPCSWNGINCRNSRVVSISLTDIGLTGQLSGDIGSLSELDNLDLSNNRGLTGPLPREIGNLKKLTKLTLVGCGFTGRIPDEIGSLQQLEVLSLNSNNFAGSIPPSIGNLSNLTWLDLADNQLDGSIPVSSGTTPGLDMLHNALHFHLGKNRLSGQIPPKLFSSKMTLIHVIFHSNLLVGSIPETLGLVTSLTVVRFENNSLNGHVPQSFNNLINVTDLLLSNNKLEGAMPNLTGMNSLRYLDLSNNSFEKSNVPLWLSNLKNLATLQMENLYLVGTIPNFLFSLGNLQNVVLKDNHLGGTLDIGTNYSRQLRVIDLRSNSIQDYKQSNDPPLIRIMLAHNPICTENGAETVKDYCTNLDIFDTKQQNNCEHGSCSPDQTLSPNCKCGYPYTGTLTCRAPSYFDWSNTANLEEILLKEFQSHNLPVDSVSLTLSTKDPFRGFEFIIQIFPLDQNHFSQQEKSSISLLLGNRSAYSAFDFIAGNQVEGPKQSSNSSSTAIIIGVAIGGSSLLLVLLALAGFYAFRQRRRAERAISRSNPFGKXFXTQFLNSQMDFREFILIDAEKKIAGNWDPSKSNCGTPQLKAPRQFSFKEIQKYTNNFSQANDVGSGGYGKVYRGTLPTGEVVAIKRAQKESKQGAQEFKAEIELLSRVHHINLVSLVGFCFEQEEQMLVYEFIPNGTLKDALTWKRGIALSWSRRLKVALGTARGLAYLHEHADPPIIHRDIKSNNILLDENYNAKVSDFGLSKSILDDDKDHVTTQVKGTMGYLDPDYYTSQRLTEKSDVYSFGVLMLELITAKRPIERGKYIVKVVRNTIDKTKDLYGLHETIDPALCSGSTLEGFEKFVDLAMECLQDSGVDRPTMSEVVKEIEEMLRSLGLNLTSELAASSSSSHRFQVSIVSSQLDHLYSNESIGSSAENLYSTSEHS 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9571g00077 973 PANTHER RECEPTOR-LIKE PROTEIN 55 36 919 - -
Vium9571g00077 973 Gene3D Ribonuclease Inhibitor 180 410 IPR032675 -
Vium9571g00077 973 SMART serkin_6 647 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9571g00077 973 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 723 932 - -
Vium9571g00077 973 Pfam Leucine rich repeat N-terminal domain 27 58 IPR013210 -
Vium9571g00077 973 FunFam Leucine-rich repeat protein kinase family protein 180 279 - -
Vium9571g00077 973 Pfam Protein tyrosine and serine/threonine kinase 650 915 IPR001245 GO:0004672|GO:0006468
Vium9571g00077 973 FunFam Leucine-rich repeat protein kinase family protein 611 722 - -
Vium9571g00077 973 ProSiteProfiles Protein kinase domain profile. 647 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9571g00077 973 ProSitePatterns Serine/Threonine protein kinases active-site signature. 767 779 IPR008271 GO:0004672|GO:0006468
Vium9571g00077 973 Gene3D Transferase(Phosphotransferase) domain 1 723 934 - -
Vium9571g00077 973 SUPERFAMILY Protein kinase-like (PK-like) 633 949 IPR011009 -
Vium9571g00077 973 Gene3D Phosphorylase Kinase; domain 1 619 722 - -
Vium9571g00077 973 CDD STKc_IRAK 653 919 - -
Vium9571g00077 973 FunFam Leucine-rich repeat family protein 26 179 - -
Vium9571g00077 973 SUPERFAMILY L domain-like 24 413 - -
Vium9571g00077 973 Gene3D Ribonuclease Inhibitor 22 179 IPR032675 -
Vium9571g00077 973 ProSitePatterns Protein kinases ATP-binding region signature. 653 675 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9571g00077 Vium-Chr9571 393012 399382 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9571g00077 2 937 Receptor kinase-like Gene Family AT5G49760 50.105 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vium9571g00077 PK_Tyr_Ser-Thr 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9571g00077 - - vra:106775737 1434.08