LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium9571g00075	ATGAGTGAATGGGATAACGTTCCACCTAATTGGGTGGGTTCAAATCCTTGCGGTGGCTGGGATGGCATTGAGTGTACAAATTCACGCATTACCTCCATATCATTAGCAAGCATGGGTTTGTCTGGTCAACTTGCTTCAGATATTGGATTACTCTCTGAACTCGTGATCTTGGATCTGTCTTACAATAAGAATTTAACTGGACCACTTCCCGATAACATTGGAAAGTTGAGAAAGCTGAAAAACTTACTTCTTATTAACTGTGGTTTCACTGGTCCTATTCCAGCTACAATTGGAAATCTAGAACGGCTTGTCTTCCTATCTTTAAATTCGAATGGATTCACTGGTCCAATTCCAGCTGCCATTGGGAATCTCTCAAATGTGTATTGGCTAGACTTAGCTGAAAACCAGCTTGAAGGGTCCATCCCCATATCCAATGGAACTACCCCTGGTCTTGACATGATGTACAACACAAAGCATTTTCATTTTGGGGTGAATAAGCTTTCAGGAAACATACCTGCTGAACTTTTTAGCTCAAAAATGTCTCTCATTCATGTGCTTTTTGAAAGCAACCGATTTACTGGAAGCATTCCATCTACACTTGGCCTTGTTAAGTCTCTGGAGGTGGTCCGTTTTGATAACAACTTTTTTAGTGGGTCTTTGCCTGAGAACATCAACAATCTTACAAGTGTTAGGGAACTGTTCCTGTCCAACAATCGCCTGTCTGGTTCCCTCCCAAACCTTACTGGAATGAATTCCCTCCGTTACCTAGATATGAGCAATAACAGTTTTGATCCATCCAACTTTCCACTGTCGTTGTCCACTCTTCCAGCATTGACGACAATAATGATGGAGAATACAAAACTTCAAGGAGCTATTCCTGTTTCTTTGTTCAACCTGCAACAGTTGCAGACAGTGGTGCTGAAAAACAACCAGCTAAATGGCACTTTAGATATTGGCAAATCCATCAGCGACCAACTGGACCTTCTTGATTTGCAGATTAATTATATTGAAGAATTTAAACCACAAATCGACGTTTCTAAAGTGAAGATAATACTTTTGAATAATCCAATTTGCCAAGAGACAGGAGTTCCACAGAGTTATTGTTCCATAACAACACCTAACAACTCATATTCAACGCCACCAGAAAACTGTGTACCTGTTCCCTGCAGCTTAGATCAGACATTAAGCCCGAAATGCAAATGTGCATACCCATATACAGGAACCTTAAATCTCAGAGCTCCTTCCTTCTCAGATTTGGAAAACGAGACTGTCTATGTAACCCTTCAGTTAAGTCTGATGCAGTCTTTTCAACATAATGATATACCTGTTGATTCAGTTTCTTTAAGCAATCCAAGGAAGAACACGTATCAGTACCTTGAATTGACTTTAAAAGTATTTCCATCTGGCCAAGATCGTTTTAATCGAACTGGAATTTCCAGTGTAGCCTTTATTCTCAGCAACCAAACATATAAGCCTCCTTCAATGTTTGGACCATATTATTTTACTTCTGATGACTATGAAAACTTTATGAATGACACAGTACTAGAAGGTCCTGTGATACCACCTAGTAAATCTTCAAATACTGCCATCATAGCTGGTGCTGCGGCTGGTGGTGCTGCCCTGTTGGTTTTAATACTTGTTATATTTGTGTATGCTCTCCACCGGAAGAATAAGCCAGTAAAAGCAACTGGGAAACATAATCCTTTTGAACAATGGGGTCCGGATGAGAGCAGTAGTAGCATCCCACAGTTGAAAGGAGCAAGGTGCTTCAGTTTTGAAGAGATACAGAACTGCACCAAAAACTTCTCACAAGTCAATAATATAGGATCTGGCGGTTATGGGAAGGTTTATCGGGGAACTCTTCCCAACGGCCAACTAATTGCAGTCAAGCGAGCTCAGAAGGAATCTATGCAGGGAGGGTTGGAGTTCAAAACCGAGATTGAACTTCTATCAAGGGTCCACCATAAAAATCTTGTCAGCCTTATTGGTTTCTGCTTCGAGCAAGGAGAACAAATGCTGATTTATGAGTATGTTGCAAATGGTACTTTGAAGGACACTCTTTTAGGGAAATCTGGAATCAGATTAGACTGGATTAGAAGGCTGAAAATAGCCCTTGGTGCTGCCAGGGGTCTGGACTATCTGCATGAACTTGCCAATCCTCCAATCATACATAGGGACATCAAATCCACTAACATTTTACTGGATGAACGCTTGAATGCTAAAGTGTCTGATTTTGGTCTCTCCAAACCTTTAGGTGACGGTGCAAAAGGTTATATCACCACACAAGTCAAAGGAACAATGGGCTACTTGGACCCAGAGTATTATATGACTCAACAGTTGACTGAGAAAAGTGATGTTTACAGCTTTGGAGTGCTAATGTTGGAGATGATAACTGCAAGAAGGCCAATAGAGCGAGGGAAGTACATTGTGAAAGTGGTCAAGGGTGCTCTAGACAAGACAAAAGGCTTCTGTGGTCTTGAGGAAGTTCTTGATCCTACTATTGAATTGGGGACAGCATTGAATGGTTTTGAGAAGTTTGTGGATCTTGCCTTGCAGTGTGTTGAAGAGTCAAGTTCTGACAGGCCTTCAATGAATTATGTGGTGAAAGAAATTGAGAACATGTTGCAGTTGGCCGGTTCAAGCCCCATTTTATCAGTATCAGGGTCCACTTCATCTAGTTATAACAATCCAACAAAGGGTAGTTCCCTCCATCCTTACGACAATGAATACTTTGATTCGAGTGTTGTCCTTCCACGTCCATAA	2763	0.4119	MSEWDNVPPNWVGSNPCGGWDGIECTNSRITSISLASMGLSGQLASDIGLLSELVILDLSYNKNLTGPLPDNIGKLRKLKNLLLINCGFTGPIPATIGNLERLVFLSLNSNGFTGPIPAAIGNLSNVYWLDLAENQLEGSIPISNGTTPGLDMMYNTKHFHFGVNKLSGNIPAELFSSKMSLIHVLFESNRFTGSIPSTLGLVKSLEVVRFDNNFFSGSLPENINNLTSVRELFLSNNRLSGSLPNLTGMNSLRYLDMSNNSFDPSNFPLSLSTLPALTTIMMENTKLQGAIPVSLFNLQQLQTVVLKNNQLNGTLDIGKSISDQLDLLDLQINYIEEFKPQIDVSKVKIILLNNPICQETGVPQSYCSITTPNNSYSTPPENCVPVPCSLDQTLSPKCKCAYPYTGTLNLRAPSFSDLENETVYVTLQLSLMQSFQHNDIPVDSVSLSNPRKNTYQYLELTLKVFPSGQDRFNRTGISSVAFILSNQTYKPPSMFGPYYFTSDDYENFMNDTVLEGPVIPPSKSSNTAIIAGAAAGGAALLVLILVIFVYALHRKNKPVKATGKHNPFEQWGPDESSSSIPQLKGARCFSFEEIQNCTKNFSQVNNIGSGGYGKVYRGTLPNGQLIAVKRAQKESMQGGLEFKTEIELLSRVHHKNLVSLIGFCFEQGEQMLIYEYVANGTLKDTLLGKSGIRLDWIRRLKIALGAARGLDYLHELANPPIIHRDIKSTNILLDERLNAKVSDFGLSKPLGDGAKGYITTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLEMITARRPIERGKYIVKVVKGALDKTKGFCGLEEVLDPTIELGTALNGFEKFVDLALQCVEESSSDRPSMNYVVKEIENMLQLAGSSPILSVSGSTSSSYNNPTKGSSLHPYDNEYFDSSVVLPRP	920

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium9571g00075	920	FunFam	Leucine-rich repeat protein kinase family protein	569	677	-	-
	Vium9571g00075	920	Pfam	Protein tyrosine and serine/threonine kinase	605	870	IPR001245	GO:0004672\|GO:0006468
	Vium9571g00075	920	SUPERFAMILY	L domain-like	24	367	-	-
	Vium9571g00075	920	SMART	serkin_6	602	877	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium9571g00075	920	Gene3D	Ribonuclease Inhibitor	1	147	IPR032675	-
	Vium9571g00075	920	Gene3D	Ribonuclease Inhibitor	148	247	IPR032675	-
	Vium9571g00075	920	ProSitePatterns	Protein kinases ATP-binding region signature.	608	630	IPR017441	GO:0005524
	Vium9571g00075	920	Gene3D	Transferase(Phosphotransferase) domain 1	678	881	-	-
	Vium9571g00075	920	Gene3D	Ribonuclease Inhibitor	248	350	IPR032675	-
	Vium9571g00075	920	SUPERFAMILY	Protein kinase-like (PK-like)	588	896	IPR011009	-
	Vium9571g00075	920	FunFam	Leucine-rich repeat protein kinase family protein	147	246	-	-
	Vium9571g00075	920	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	722	734	IPR008271	GO:0004672\|GO:0006468
	Vium9571g00075	920	FunFam	Leucine-rich repeat family protein	1	146	-	-
	Vium9571g00075	920	Gene3D	Phosphorylase Kinase; domain 1	574	677	-	-
	Vium9571g00075	920	ProSiteProfiles	Protein kinase domain profile.	602	875	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium9571g00075	920	Pfam	Leucine Rich repeats (2 copies)	228	265	IPR025875	-
	Vium9571g00075	920	CDD	STKc_IRAK	608	874	-	-
	Vium9571g00075	920	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	678	886	-	-
	Vium9571g00075	920	PANTHER	RECEPTOR-LIKE PROTEIN 55	8	874	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium9571g00075	Vium-Chr9571	377038	387085	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium9571g00075	2	918	Receptor kinase-like Gene Family	AT5G49760	57.220	0.0	989

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Vium9571g00075		PK_Tyr_Ser-Thr	2.3e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium9571g00075	-		-	gmx:100780344	1524.22