Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9571g00063 ATGACAATGGCTTCGGAGATTGAAATTTCTCCGGCCGACGCTCGCAAGGCTCCCGGCAAAGAGCAGCAAGCGGCCGGCGTCGGAATCCTTCTGCAGATCATGATGCTCGTCCTGTCCTTCGTCCTCGGTCACGTTCTCCGTCGAAAGAAGGTTTACATCATCCCCGAAGCCAGTGCTTCTCTTCTCATAGGGTTAATTGTTGGCATTCTAGCAAACATTTCGGACACCGAGACTAGTATCAGGGCGTGGTTTAATTTTCACGAGGAGTTTTTCTTCCTGTTCCTGCTACCTCCTATCATATTTCAGTCCGGGTTCAGTCTCGCACCTAAACCCTTTTTCTCGAATTTTGGAGCAATAGTCACATTTGCTATATTCGGCACCTTTATAGCTTCAATTGTTACCGGTATCTTGGTTTATCTTGGTGGTTTGCTCTTTCTAATGTATAAGCTACCTCTCGTAGAGTGCCTGATGTTTGGTGCTCTTATATCAGCTACTGACCCTGTAACTGTTTTGTCCATATTCCAGGAGCTGGGCACTGATGTCAATCTATATGCCTTGGTTTTTGGGGAATCCGTTTTGAACGATGCAATGGCAATTTCTCTGTACAGGACAATGTCATCTGTTAAAGCTCAGCCATCTGGACAAAATTTATTCATGGTGGTTGTTCGGTTTTTGGAGACTTTTGTTGGGTCAATGTCAGCAGGTGTTGGTGTTGGATTTATATCTGCTTTGCTATTTAAGTATGCAGGATTAGATATTGACAACCTTCAGAACTTGGAGAGCTGTCTATTTGTCCTTTTCCCATATTTCTCGTACATGCTTGCTGAAGGCCTTGGTCTGTCTGGTATTGTTTCAATACTGTTCACTGGAATAGTCATGAAGCACTATGCGTATTCCAATTTGTCACAAAGTTCTCAAAGATTTGCTTCAGCCTTCTTCGAGTTGATATCATCTTTAGCTGAAACATTTGTATTTATATACATGGGCTTTGATATTGCTATGGAGCAACATAGCTGGTCACACGTTGGATTTATATTCTTCTCCATTATATTTATTGGAATTGCGAGGGCTGCAAATGTCTTTTCTTGTGCTTATTTAGTCAATCTGGTCAGACCCAGTCATCGAAAGATACCTCCAAAACATCAGAAGGCACTTTGGTATAGTGGACTTCGAGGAGCAATGGCTTTTGCGCTTGCTCTGCAATCCGTTCATGATCTTCCAGAAGGACATGGACAGACCATCTTTACTGCAACTACTGCAATAGTTGTCTTGACGGTATTGCTAATTGGTGGTTCAACAGGTACCATGCTGGAAGCTCTAGATGTTGTAGGTGGTGATAATGATAGCCCTTTGTCTTCAGTTGGTACTATTACAAATTTTGATGGAAACAATGGTTATATTGCTCCTCCTTACAATGAAGAGTCATCTTCAGGGAACAAAATCAAGATGAAGCTAAAAGAATTCCACAAGAGTGCTGCATCCTTTACAGCAATTGATAAAAACTACCTCACCCCATTCTTTACAGTTCAAAATGGAGATGAAGATGATGAAGCCGAGCCTTTTACATCGGGATTTCATGGGCAGAACCGTTATTCGACATGA 1602 0.4232 MTMASEIEISPADARKAPGKEQQAAGVGILLQIMMLVLSFVLGHVLRRKKVYIIPEASASLLIGLIVGILANISDTETSIRAWFNFHEEFFFLFLLPPIIFQSGFSLAPKPFFSNFGAIVTFAIFGTFIASIVTGILVYLGGLLFLMYKLPLVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSSVKAQPSGQNLFMVVVRFLETFVGSMSAGVGVGFISALLFKYAGLDIDNLQNLESCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKHYAYSNLSQSSQRFASAFFELISSLAETFVFIYMGFDIAMEQHSWSHVGFIFFSIIFIGIARAANVFSCAYLVNLVRPSHRKIPPKHQKALWYSGLRGAMAFALALQSVHDLPEGHGQTIFTATTAIVVLTVLLIGGSTGTMLEALDVVGGDNDSPLSSVGTITNFDGNNGYIAPPYNEESSSGNKIKMKLKEFHKSAASFTAIDKNYLTPFFTVQNGDEDDEAEPFTSGFHGQNRYST 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9571g00063 533 PANTHER SODIUM/HYDROGEN EXCHANGER 12 518 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Vium9571g00063 533 Pfam Sodium/hydrogen exchanger family 35 438 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vium9571g00063 533 Gene3D - 152 204 - -
Vium9571g00063 533 MobiDBLite consensus disorder prediction 513 533 - -
Vium9571g00063 533 NCBIfam sodium/hydrogen exchanger 3 33 461 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium9571g00063 533 PRINTS Na+/H+ exchanger signature 90 101 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium9571g00063 533 PRINTS Na+/H+ exchanger signature 119 127 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium9571g00063 533 PRINTS Na+/H+ exchanger signature 104 118 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium9571g00063 533 PRINTS Na+/H+ exchanger signature 159 169 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9571g00063 Vium-Chr9571 307689 316293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9571g00063 21 440 Antiporters AT3G05030 34.163 9.83e-54 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9571g00063 K14724 - gmx:100790830 944.495