Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9571g00047 ATGTATCATTCAAAGAATGTTCCTAGTGCAAGTTTAGTTGGAGGTAATTCATTAGTTCATGGTCAGCACATAGATTGTGGTGGCAGCGCAATGGATCCTGGCAATGGAGGAAACAGTCATAGCAACAACTCTAATCTTACCTCAAAACAACGTCTACGGTGGACACATGAATTACACGAGCGCTTCGTTGATGCTGTGGCTCAACTTGGTGGGCCAGATCGTGCCACACCCAAAGGTGTCCTTAGAGTTATGGGTGTACAAGGATTGACCATTTACCATGTCAAAAGCCATTTACAGAAGTACCGACTAGCAAAATATTTACCGGATTCCTCATCTGATGGGAAAAAGGCTGACAAGAAAGAAACTGGGGATGTGCTTTCCAATCTCGATGGTTCATCTGGGATGCAGATTACTGAAGCACTAAAGCTTCAAATGGAGGTCCAGAAGCGACTACATGAACAATTGGAGGTGCAGAGACAGCTACAATTACGGATAGAAGCCCAGGGTAAATACCTGAAAAAGATAATCGAAGAACAACAGCGGCTCAGTGGGGTTCTTTCAGAGGCACCTGACACTGAGGTTGTGGCTGTGGTTCCGGGGGACGTGTGCCAAGAACCGGATAATAAGACCGACCCGTCTACCCCCGACCCAGAAAAGGCTGCCAAAGACCGTGTCCCAGCAAAGAGTCTTTCCATGGAATCTTTTTCATCACACCATGAACCATTGACTCCAGATTCTGGTTGCCATATTGGTTCCCCTGCTGACAGCCCTAAAGGGGAGAGATCAACCAAGAAGCAACGGCTAAACATGGACGGATCGTATTCAAAGCCAGACATGGTGCTTCCACTTCAGATACTGGAGTCAAGCATGTCACAATACCAACATCCTAGCACTGTTTTTCTTGGCCAAGAGCAATTTGATCCTTCATTGGGTATGTCTACCAGAAGTGGTGAGGAATTGGATAAGGTTGGTGGCAGTAATCTGTGA 987 0.464 MYHSKNVPSASLVGGNSLVHGQHIDCGGSAMDPGNGGNSHSNNSNLTSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKETGDVLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSEAPDTEVVAVVPGDVCQEPDNKTDPSTPDPEKAAKDRVPAKSLSMESFSSHHEPLTPDSGCHIGSPADSPKGERSTKKQRLNMDGSYSKPDMVLPLQILESSMSQYQHPSTVFLGQEQFDPSLGMSTRSGEELDKVGGSNL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9571g00047 328 MobiDBLite consensus disorder prediction 109 125 - -
Vium9571g00047 328 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 45 318 IPR044848 GO:0003700
Vium9571g00047 328 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Vium9571g00047 328 MobiDBLite consensus disorder prediction 304 328 - -
Vium9571g00047 328 MobiDBLite consensus disorder prediction 211 226 - -
Vium9571g00047 328 Pfam MYB-CC type transfactor, LHEQLE motif 135 181 IPR025756 -
Vium9571g00047 328 NCBIfam myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Vium9571g00047 328 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Vium9571g00047 328 Gene3D - 48 107 - -
Vium9571g00047 328 FunFam Myb family transcription factor 48 106 - -
Vium9571g00047 328 MobiDBLite consensus disorder prediction 199 276 - -
Vium9571g00047 328 MobiDBLite consensus disorder prediction 24 46 - -
Vium9571g00047 328 Coils Coil 138 158 - -
Vium9571g00047 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 106 IPR017930 -
Vium9571g00047 328 MobiDBLite consensus disorder prediction 109 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9571g00047 Vium-Chr9571 242443 246583 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9571g00047 84 328 G2-like Transcription Factor Family AT2G01060 63.636 2.68e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium9571g00047 Myb_DNA-binding 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9571g00047 - - gmx:100786925 560.066