Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9571g00044 ATGTACCCGAGGCTCATACACCCCCATGATGGGATTGTGGCGCAGGATGACATGCAGGCTGCTGCTTCCAACCTCTCTCACTCTCACAAGGGAGACCCTTGTCTCGTTCTCACTGCTGATCCCAAACCTCGCCTTCGTTGGACTCAGGACTTGCACGAACGATTCGTTGATGCCGTCACACAGCTTGGGGGAGCAAGTAAAGCTACACCAAAAGCAATCATGCGGACCATGAATGTCAAGGGTCTGACTCTGTTTCATTTGAAGAGTCATCTTCAGAAATACAGGCTTGGTAAGCAATCTGGGAAAGATGTTGGTGAAGGATGCAAAGATGGTTCATATCTTTTAGAAAGCCCTGGCACTGAGAACACTTCTCCAAAGCTGCCAACTTCCGACACAAACGAGGGATATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAGAGTAAGTTACATTTGCAAGTGGAGGCAGAGAAGCATTTGCAGATTCGGCAGGATGCAGAAAGGAGATACATGGCCATGCTTGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATTGGTGCTACAGTTATAGACACTGACAGCCAAAAGTTTCAAGCAATTGGAAGCAAAACACCTAGAGGTACTTTGGTTGATCCTCTTGGATTTTACTCCTTGCCATCAGCTGAGGTGGCCGGGGTGAATGTTCCAGATGAAGAAATAGCACCTAGTCTCCCACCCCAAAGGGCTGATTGTTCAACTGAAAGTTGTTTAACCTCACATGAAAGTTCTGGAGGATTGACTTTAGAAGGATCACCCGGTGGGGGAAAAAGAAGGATGCTAGGCATGGACTCCATGGCAGCTCCTTTGATCTGGAGTGAAGCTAAGATGAGAACTCAGGCCATCAATGTGGCCCAAGGTAGTCTTCCTCAAGGAATAACTAGGTATGGCATGTAG 942 0.4745 MYPRLIHPHDGIVAQDDMQAAASNLSHSHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDVGEGCKDGSYLLESPGTENTSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGATVIDTDSQKFQAIGSKTPRGTLVDPLGFYSLPSAEVAGVNVPDEEIAPSLPPQRADCSTESCLTSHESSGGLTLEGSPGGGKRRMLGMDSMAAPLIWSEAKMRTQAINVAQGSLPQGITRYGM 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9571g00044 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 99 IPR017930 -
Vium9571g00044 313 MobiDBLite consensus disorder prediction 116 131 - -
Vium9571g00044 313 Pfam Myb-like DNA-binding domain 45 95 IPR001005 -
Vium9571g00044 313 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Vium9571g00044 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677
Vium9571g00044 313 Gene3D - 41 99 - -
Vium9571g00044 313 MobiDBLite consensus disorder prediction 100 132 - -
Vium9571g00044 313 MobiDBLite consensus disorder prediction 244 262 - -
Vium9571g00044 313 MobiDBLite consensus disorder prediction 236 275 - -
Vium9571g00044 313 FunFam Myb family transcription factor 41 99 - -
Vium9571g00044 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 15 263 IPR044848 GO:0003700
Vium9571g00044 313 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9571g00044 Vium-Chr9571 231291 237883 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9571g00044 31 255 G2-like Transcription Factor Family AT3G24120 47.899 1.19e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium9571g00044 Myb_DNA-binding 5.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9571g00044 - - gmx:100786397 590.112