Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9571g00043 ATGTACCCGAGGCTCATACACCCCCATGATGGGATTGTGGCGCAGGATGACATGCAGGCTGCTGCTTCCAACCTCTCTCACTCTCACAAGGGAGACCCTTGTCTCGTTCTCACTGCTGATCCCAAACCTCGCCTTCGTTGGACTCAGGACTTGCACGAACGATTCGTTGATGCCGTCACACAGCTTGGGGGAGCAAGTAAAGCTACACCAAAAGCAATCATGCGGACCATGAATGTCAAGGGTCTGACTCTGTTTCATTTGAAGAGTCATCTTCAGAAATACAGGCTTGGTAAGCAATCTGGGAAAGATGTTGGTGAAGGATGCAAAGATGGAATATCAGGTTCATATCTTTTAGAAAGCCCTGGCACTGAGAACACTTCTCCAAAGCTGCCAACTTCCGACACAAACGAGGGATATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAGAGTAAGTTACATTTGCAAGTGGAGGCAGAGAAGCATTTGCAGATTCGGCAGGATGCAGAAAGGAGATACATGGCCATGCTTGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATTGGTGCTACAGTTATAGACACTGACAGCCAAAAGTTTCAAGCAATTGGAAGCAAAACACCTAGAGGTACTTTGGTTGATCCTCTTGGATTTTACTCCTTGCCATCAGCTGAGGTGGCCGGGGTGAATGTTCCAGATGAAGAAATAGCACCTAGTCTCCCACCCCAAAGGGCTGATTGTTCAACTGAAAGTTGTTTAACCTCACATGAAAGTTCTGGAGGATTGACTTTAGAAGGATCACCCGGTGGGGGAAAAAGAAGGATGCTAGGCATGGACTCCATGGCAGCTCCTTTGATCTGGAGTGAAGCTAAGATGAGAACTCAGGCCATCAATGTGGCCCAAGGTAGTCTTCCTCAAGGAATAACTAGGTATGGCATGTAG 951 0.4732 MYPRLIHPHDGIVAQDDMQAAASNLSHSHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDVGEGCKDGISGSYLLESPGTENTSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGATVIDTDSQKFQAIGSKTPRGTLVDPLGFYSLPSAEVAGVNVPDEEIAPSLPPQRADCSTESCLTSHESSGGLTLEGSPGGGKRRMLGMDSMAAPLIWSEAKMRTQAINVAQGSLPQGITRYGM 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9571g00043 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 99 IPR017930 -
Vium9571g00043 316 MobiDBLite consensus disorder prediction 247 265 - -
Vium9571g00043 316 MobiDBLite consensus disorder prediction 239 278 - -
Vium9571g00043 316 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677
Vium9571g00043 316 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Vium9571g00043 316 FunFam Myb family transcription factor 41 99 - -
Vium9571g00043 316 MobiDBLite consensus disorder prediction 118 134 - -
Vium9571g00043 316 Gene3D - 41 99 - -
Vium9571g00043 316 MobiDBLite consensus disorder prediction 115 135 - -
Vium9571g00043 316 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 15 266 IPR044848 GO:0003700
Vium9571g00043 316 Pfam Myb-like DNA-binding domain 45 95 IPR001005 -
Vium9571g00043 316 Pfam MYB-CC type transfactor, LHEQLE motif 140 185 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9571g00043 Vium-Chr9571 231288 237883 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9571g00043 31 258 G2-like Transcription Factor Family AT3G24120 46.218 3.22e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium9571g00043 Myb_DNA-binding 5.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9571g00043 - - gmx:100786397 584.719