Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9571g00007 ATGGACTCAAAAACTAGCTCTAGATCTCTTCCGAAACACCATCAGAAGACGGCTGGAATTCAAACCCTTGAGGCAAAAGACAACGGGTCTTCAGGGAATCCAGCTTCTCTGAAAACAGGGAAAAGTGAACTGGCTGGTCCAGAGGATTTATCCAAGTCTGTAGGAACCGTTTCCAAACAGAATACTGGGGAAACTGCTGAAAACAAGAAGTTAGGAGTTTCAATCCAAAAGGGGTCTGCCGATTCCTTGAGCAATAAAAGTAGTTCTGGTGCTTCTTCATCTGTTCTCGACAAGGCGGATCGTGCTGTTAATGAGAACATAGGCTCACAGGAAAGCTCCATTGACCAAGACAAAAAGACATCGGAATATGGAAGTGTAAAGAACAGTTCTGTTTCTGCCAAAGTTAGTGATGGGGCGAGCAGTCTTGCAAAGACAAGTGGAAGTGCCAAGATTAGTGACAGAGCTGATTTTGTTGAGAGTGGTAAGAGCAGTATTTACAGAGGAAGTACAAGCAGTGATGTGAGTGATGAGAGTACTTGTAGTAGCTTTAGTAGCAGCATAAACAAACCTCACAAGGCAAATGACTTGAGATGGGAAGCCATTCAAGCAGTTCGAAGTAGAGATGGGGTGTTGGGATTAGGTCACTTTAGACTACTGAAGAGGCTGGGTTGTGGGGATATAGGCAGTGTTTACCTCTCCGAGTTGAGTGGAACTAAATGTTACTTTGCAATGAAGGTAATGGACAAAGGGTCCCTAGCGAGTCGCAAAAAGCTACTTCGTGCCCAGACAGAAAGAGAAATCCTGCAGTCTCTTGATCACCCATTTCTCCCAACTTTGTATACTCATTTTGAAACTGAGAAATTCTCATGTTTGGTAATGGAATTCTGCCCAGGTGGTGACCTCCATACTCTCAGGCAGAAGCAACCAGGGAAGCATTTTCCTGAGCAGGCAGTAAAATTTTATGTAGCAGAGGTCCTTCTGGCTTTGGAGTACCTGCACATGCTTGGGATTGTCTACCGTGACCTTAAGCCAGAAAATGTCCTTGTTAGGGACGACGGACATATTATGCTCTCTGACTTTGATCTCTCCCTCCGATGTGCTGTCAGTCCGACCCTTGTGAAAACCTCATCCACGGATTCTGAGCCTTTAAGAAAGAACCCTGTTTATTGTGTCCAACCAGCATGTATTGAACCACCTTCCTGCATCCAACCATCCTGTGTTGCACCCACCACATGCTTTTCACCCCGGCTCTTCTCTAGCAAATCAAAGAAAGACCGGAAGCCAAAAACTGAAATTGGCAACCAAGTGAGCCCATTACCTGAGCTGATTGCAGAGCCTACTGATGCTCGGTCCATGTCATTTGTTGGAACTCATGAATACTTGGCACCTGAAATCATCAAGGGTGAAGGTCATGGGAGTGCAGTTGATTGGTGGACTTTTGGGATCTTTCTATACGAGCTGTTGTTCGGTAAAACTCCATTCAAGGGATCCGGTAACCGAGCCACGCTGTTTAACGTTGTCGGGCAGCCGCTGCGTTTTCCAGAAGCACCTGTTGTGAGTTTTGCAGCAAGGGATCTTATAAGGGGGTTGCTGGTGAAAGAACCTCAGCACAGATTGGCATACAAAAGAGGGGCAACTGAGATAAAGCAACACCCTTTTTTTGAAGGTGTGAACTGGGCATTGATCAGATGTGCTACCCCACCAGAGATCCCAAAGGTTGTAGAGTTTGAGAAGATACCCTCCCCAGCCTCATCAGGTGGTGGTGAAAAGGCTGTTAACCACATGTCAATAGCTAATCAGAAAGGTTCTGATAATTATCTGGAGTTTGATTTCTTCTAG 1839 0.4562 MDSKTSSRSLPKHHQKTAGIQTLEAKDNGSSGNPASLKTGKSELAGPEDLSKSVGTVSKQNTGETAENKKLGVSIQKGSADSLSNKSSSGASSSVLDKADRAVNENIGSQESSIDQDKKTSEYGSVKNSSVSAKVSDGASSLAKTSGSAKISDRADFVESGKSSIYRGSTSSDVSDESTCSSFSSSINKPHKANDLRWEAIQAVRSRDGVLGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKTSSTDSEPLRKNPVYCVQPACIEPPSCIQPSCVAPTTCFSPRLFSSKSKKDRKPKTEIGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKVVEFEKIPSPASSGGGEKAVNHMSIANQKGSDNYLEFDFF 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9571g00007 612 MobiDBLite consensus disorder prediction 53 69 - -
Vium9571g00007 612 SMART serkin_6 216 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9571g00007 612 Pfam Protein kinase domain 217 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9571g00007 612 Pfam Protein kinase domain 451 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9571g00007 612 Gene3D Transferase(Phosphotransferase) domain 1 300 375 - -
Vium9571g00007 612 FunFam Serine/threonine-protein kinase AGC1-7 447 572 - -
Vium9571g00007 612 MobiDBLite consensus disorder prediction 12 38 - -
Vium9571g00007 612 MobiDBLite consensus disorder prediction 123 145 - -
Vium9571g00007 612 PANTHER FLIPPASE KINASE 1-RELATED 62 577 - -
Vium9571g00007 612 ProSiteProfiles Protein kinase domain profile. 216 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9571g00007 612 MobiDBLite consensus disorder prediction 75 95 - -
Vium9571g00007 612 FunFam serine/threonine-protein kinase D6PK-like 300 367 - -
Vium9571g00007 612 FunFam Serine/threonine-protein kinase D6PK-like 214 299 - -
Vium9571g00007 612 CDD STKc_phototropin_like 215 578 - -
Vium9571g00007 612 MobiDBLite consensus disorder prediction 1 145 - -
Vium9571g00007 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 337 349 IPR008271 GO:0004672|GO:0006468
Vium9571g00007 612 Gene3D Transferase(Phosphotransferase) domain 1 448 572 - -
Vium9571g00007 612 SUPERFAMILY Protein kinase-like (PK-like) 191 574 IPR011009 -
Vium9571g00007 612 Gene3D Phosphorylase Kinase; domain 1 214 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9571g00007 Vium-Chr9571 32179 36280 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9571g00007 40 612 AGC Kinase Gene Family AT5G47750 77.875 0.0 874
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium9571g00007 Pkinase 1.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9571g00007 K08286 - gmx:100781600 1087.79