Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9564g00007 ATGGGTTTGAGTTCTAAGCAGGTTTCTAGCAGTGGACTTGATTGGAAACAAACCTTATTGGAGGCTCAGGACTTGGAACTCCCAAAGCCTAATCTGATGAGGAAACAACAGCAGCAGCAGCAGCAGCAAACTCAGCCTTCAGAGTCTTTGAAGTGCCCGAGATGTGACTCAACCAACACCAAGTTTTGTTACTACAACAATTACAACAAGTCTCAGCCTCGCCATTTCTGCAGGGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTACGAAATGTTCCGGTGGGTGGTGGAAGGAAGAACAAGAGGGTCAAAAAACCAAACACTCCAACACCTTCTTCCACCACTGCCACTACCACCCCGACAACAGCCAGCCCTTCTACTTGCACTGCCACCGTCACAACCTCAATTGGCAACATGGATGCTTTGCTGGGTAGTAGCCACATGACAATTCAAACTCCTCTTGCAGATGATCAGAAACACATGGCTTCCTCTCTCTACCAAGCTCTAATTCGTCCACCACCTTTGCTGCTACAACAGAATCTGATGAACACAAGAGACTTAGACGGCAAAGATTTTGGTATTGGTATTGGTATTGGTAATAATGGTATCTTCCCGAGTTCAACTTTGCCTCTTCCTCATCAAAGCCAAAGCCTACTCTTCCCTTTCTCAACCTCAAGCAGCTCTTTTGACACCAACCCTTGTTCGGTGTCAACTTCTCTGAGATCATCCAATGTTTATAACTATGGGGAGGAGTTCAAAGCAGCGGAAGAATCAACCATCAACAGTACTTCTATAGCGCCTAGCACAGGTGGCACTAACACACAGCCATGGGAGATAGCAGCAACAAGTGGTGTTGGCTTGGGAACTTCAAACTTTTGGAATTGGGAGGACTTTGATTCATTGGTCTCAACTGATCTAAAAGATCCCTGGGATGATTCTGACATCAAACCCTGA 957 0.4629 MGLSSKQVSSSGLDWKQTLLEAQDLELPKPNLMRKQQQQQQQQTQPSESLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKPNTPTPSSTTATTTPTTASPSTCTATVTTSIGNMDALLGSSHMTIQTPLADDQKHMASSLYQALIRPPPLLLQQNLMNTRDLDGKDFGIGIGIGNNGIFPSSTLPLPHQSQSLLFPFSTSSSSFDTNPCSVSTSLRSSNVYNYGEEFKAAEESTINSTSIAPSTGGTNTQPWEIAATSGVGLGTSNFWNWEDFDSLVSTDLKDPWDDSDIKP 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9564g00007 318 MobiDBLite consensus disorder prediction 107 128 - -
Vium9564g00007 318 MobiDBLite consensus disorder prediction 88 128 - -
Vium9564g00007 318 Pfam Dof domain, zinc finger 49 102 IPR003851 GO:0003677|GO:0006355
Vium9564g00007 318 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Vium9564g00007 318 MobiDBLite consensus disorder prediction 26 52 - -
Vium9564g00007 318 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
Vium9564g00007 318 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 215 IPR045174 GO:0003700|GO:0006355
Vium9564g00007 318 MobiDBLite consensus disorder prediction 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9564g00007 Vium-Chr9564 69210 71071 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9564g00007 50 107 C2C2-Dof Transcription Factor Family AT1G28310 84.746 3.26e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium9564g00007 zf-Dof 1.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9564g00007 - - gmx:100818111 444.891