Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9559g00001 ATGTCTCAGACAGAGAAGGATCCGGGTATCAGGCTATTTGGCAGGAAGATTCCGGTGCCGGAATGTCAGATTCCGGCCAACTCTGGACCCACGGATGCTTTGAGCAGCATAAAAAAGGAGGAGGAACTGGGAAGACCCAGTGAATGTGGAGAAAACTCTGAAAAACAAGAAAAATCATCTGATTCAAGAGATAGTAAACAAGAGTTAGAGCATAAAGTGCAGGAAAATGAGCCAATAGTAAATCCCAAACCCGCGGAAGATAACACGGAGAATGGTGGCTCAGACCAAGATAAAGTCTTAAAGAAACCAGACAAGATTCTTCGGTGTCCACGATGTAACAGTTTGGACACCAAGTTTTGTTATTTTAACAACTACAACGTTAACCAACCTAGGCATTTCTGCAAGAACTGTCAAAGGTATTGGACTGCTGGTGGAACAATGAGAAATGTTCCCATAGGTGCTGGGAGACGGAAGAACAAACACCTAGCTTCTCAATACCGACACATTATAGTATCCTCTAATGGAATTCCTGCCTCCAGACTAGAAACTGAGGAAGCATCTGGTTTCCAACATGTCACAAATCTTGAATCCTCGGTTCCTTTCAGGTCTTCAGCAGATAGCAGCACTGTTTTGAAATTTGGGCCAGATACCACTCTTTGTGAATCAATGGATTCAATGCTTAATCTTAGAGACGAGAGAAGATGTGTTGATGCAAGTTCTATAAACCGTGCAGAGTATGTTGGGGAACCATCTTTATGTGGGTCTTCTGTGACGAACAACAGTACTCAGGGAAATGAATTATCAGAACACAAGACATCAAATTGGTTACAATGCTACCCTGTTCCTCCATGGGTGTTAACTTATCCGGGTTGGAATAATGTGAGTTCCGTGGAAGCAGTTCATCAGTCTTCAGCACCAATGTGTAGTCCATACAACACTGGTCCTGCAGCAATGCAATGGTGTCCCACAGCAATGGTGGCAATTCCTGGCATGTGTCCACCCAGCATTCCTTTTCAGGTTGTTCCACCATCATGCTGGAGTGGAACACCTCATTGGAATGCTGGAACTGGGTCAGTGTCCATAGGATCCAATGCTTGTCTTTCGCCATCGTCCTCCACCAGTAACAGTTGCTGCTCAGGCAATGGCTCCCCAACCCTTGGAAAACATGCAAGAGACACTGTTTTTGCTGATGAAGAGAAATCAGAGAAGTGTGTTTTGGTTCCAAAGACCATCAGAACCGATGCCTCTAACGAGGCCTCAAAATGTCCTATAAGGGCTGCATTAAGCATCAAGCCTGATCAACAGAAGAAAATTGAACCAAAAGAAGGCAAAGATCGTGTGTTGGGTGCCTCTCAAATCTTGGAAGCCAATCCAGCAGCTATTTCTCGTGCTCATGCATTTCAGGAGAGCATATAG 1416 0.4463 MSQTEKDPGIRLFGRKIPVPECQIPANSGPTDALSSIKKEEELGRPSECGENSEKQEKSSDSRDSKQELEHKVQENEPIVNPKPAEDNTENGGSDQDKVLKKPDKILRCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRHIIVSSNGIPASRLETEEASGFQHVTNLESSVPFRSSADSSTVLKFGPDTTLCESMDSMLNLRDERRCVDASSINRAEYVGEPSLCGSSVTNNSTQGNELSEHKTSNWLQCYPVPPWVLTYPGWNNVSSVEAVHQSSAPMCSPYNTGPAAMQWCPTAMVAIPGMCPPSIPFQVVPPSCWSGTPHWNAGTGSVSIGSNACLSPSSSTSNSCCSGNGSPTLGKHARDTVFADEEKSEKCVLVPKTIRTDASNEASKCPIRAALSIKPDQQKKIEPKEGKDRVLGASQILEANPAAISRAHAFQESI 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9559g00001 471 MobiDBLite consensus disorder prediction 35 77 - -
Vium9559g00001 471 ProSiteProfiles Zinc finger Dof-type profile. 107 161 IPR003851 GO:0003677|GO:0006355
Vium9559g00001 471 PANTHER CYCLIC DOF FACTOR 2 1 470 IPR045174 GO:0003700|GO:0006355
Vium9559g00001 471 ProSitePatterns Zinc finger Dof-type signature. 109 145 IPR003851 GO:0003677|GO:0006355
Vium9559g00001 471 MobiDBLite consensus disorder prediction 1 99 - -
Vium9559g00001 471 Pfam Dof domain, zinc finger 104 161 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9559g00001 Vium-Chr9559 8308 11197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9559g00001 7 470 C2C2-Dof Transcription Factor Family AT5G39660 35.917 6.61e-66 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium9559g00001 zf-Dof 8e-32 No_clan