Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9546g00001 ATGGCAGGCGCATGCAGCGGAAAGGTTCTCACAAGTGGTAAAAAACCTTTCTTAGATGAGGATGATATTCAGAAGTTTCCTTATTTTAAAGCAGTGATAAAAGAGACACTCAGATTGTACCCACCAGCACCGTTGCTTGTACCAAGAGAAACAAGGGAAAAAGTTACGATAGATGGTTACGAAATTCCAGCGAAGACAATGATATATGTGAATGCTTGGGCTATTCATAGAGACCCTGGGGCTTGGGAAGAAGCAGAAGAGTTTATACCAGAGAGGTTTTTAAACAGCACTGTAGATCTTCGTGGACAAGATTTTTGTTTCATTCCGTTCGGTGCTGGTCGTAGAATGTGCCCAGGTTTGAATATGGCTTTTGCTACATTGGATGTTGTACTTGCTAACCTTCTTTGTTCCTTTGACTGGGAATTGCCGGAAGGAATGAAGAGCGAAGACATTGACACAGAAGCGTTACCGGGACTTTCACAGCATAAGAAGAATCCTCTGTGTGTCTTGGCCAAGTGCCAAATGTGA 528 0.4299 MAGACSGKVLTSGKKPFLDEDDIQKFPYFKAVIKETLRLYPPAPLLVPRETREKVTIDGYEIPAKTMIYVNAWAIHRDPGAWEEAEEFIPERFLNSTVDLRGQDFCFIPFGAGRRMCPGLNMAFATLDVVLANLLCSFDWELPEGMKSEDIDTEALPGLSQHKKNPLCVLAKCQM 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9546g00001 175 SUPERFAMILY Cytochrome P450 13 171 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium9546g00001 175 PRINTS P450 superfamily signature 108 117 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium9546g00001 175 PRINTS P450 superfamily signature 31 42 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium9546g00001 175 PRINTS P450 superfamily signature 117 128 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium9546g00001 175 PANTHER CYTOCHROME P450 71B11-RELATED 17 172 - -
Vium9546g00001 175 Pfam Cytochrome P450 17 165 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium9546g00001 175 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 110 119 IPR017972 GO:0005506|GO:0016705
Vium9546g00001 175 Gene3D Cytochrome P450 8 174 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium9546g00001 175 PRINTS E-class P450 group I signature 71 95 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium9546g00001 175 PRINTS E-class P450 group I signature 30 48 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium9546g00001 175 PRINTS E-class P450 group I signature 107 117 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium9546g00001 175 PRINTS E-class P450 group I signature 117 140 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9546g00001 Vium-Chr9546 91 759 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9546g00001 13 172 Cytochrome P450 AT3G26330 55.000 1.68e-59 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9546g00001 - - vum:124848599 366.311