Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9536g00001 ATGATTAAAGGGGGTTACAATTCCGTTGTTAAGTCTCTGAGAGAAGGAATTACAATTCACTTGAACCACATTGTAACAAATGTGTCATATGGTATCAAGGAACCACGTTGTAACACTATATTTCTCGGTTTGTTGAGGAGGGAGGAGGAAATTGGTATGGTTGTTGCCAAGAGCGACAGCAACAGTGAACCTTGTACTTCATACAATTGTTATAAAGTAGCAGCCTTGACTGAGACCATATTAGAGACAAGTCAAGTCTTTAATCTAAAAGATCGGTACGTTCTCGGGGAGCAATTGGGTTGGGGACAGTTTGGTGTCATAAGGCCATGTTCGGACAAGTTAACAGGAGAGGTTTTGGCCTACAAATCAATTGCTAAAGATAGGTTGGTTACTTCGGATGATTTGAGGAGTGTAAAACTTGAGGTAAAGATAATGGCTAGGTTATCTGGTCACCCCAATGTTGTGGATCTCAAAGCAGTTTATGAAGAGGAAGGCTTTGTTCACTTGGTGATCGAACGTTGTGTTGAAGGAGAGTTTTTTCATCGATTAGAGAAGCATGAATGGTTTTCAGAATCTAAAGCCAAGGTTATCTTCAGGCACCTCATGCAGGTGGTTTTGTATTGTCATGAAAATGGGGTTGTTTATAGAGATTTAAAGCCTGAGAACATTCTCGTAGCAACAAGATCCTCATCTCCTATTAAATTGGCAGATTTTGGACTAGCAACCTACATCAAGGAGCATGGTCAATGGAAGATAGTGGAAGAGGATTTGCCACCACCCAAGCCTCCAGACCTGAATTAG 801 0.4107 MIKGGYNSVVKSLREGITIHLNHIVTNVSYGIKEPRCNTIFLGLLRREEEIGMVVAKSDSNSEPCTSYNCYKVAALTETILETSQVFNLKDRYVLGEQLGWGQFGVIRPCSDKLTGEVLAYKSIAKDRLVTSDDLRSVKLEVKIMARLSGHPNVVDLKAVYEEEGFVHLVIERCVEGEFFHRLEKHEWFSESKAKVIFRHLMQVVLYCHENGVVYRDLKPENILVATRSSSPIKLADFGLATYIKEHGQWKIVEEDLPPPKPPDLN 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9536g00001 266 Pfam Protein kinase domain 93 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9536g00001 266 PANTHER SERINE/THREONINE-PROTEIN KINASE 82 245 - -
Vium9536g00001 266 ProSitePatterns Protein kinases ATP-binding region signature. 99 126 IPR017441 GO:0005524
Vium9536g00001 266 SUPERFAMILY Protein kinase-like (PK-like) 90 247 IPR011009 -
Vium9536g00001 266 SMART serkin_6 93 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9536g00001 266 ProSiteProfiles Protein kinase domain profile. 93 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9536g00001 266 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Vium9536g00001 266 Gene3D Transferase(Phosphotransferase) domain 1 84 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9536g00001 Vium-Chr9536 1114 1914 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9536g00001 88 245 EF-hand Containing Proteins AT5G12180 45.912 2.52e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium9536g00001 Pkinase 4.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9536g00001 - - vum:124848592 520.005