Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9535g00001 GTCGGAGCGTCTTTGTCAAGTGCAGCATCGAATTCAAACTTGTCAACAGGAGATTTCAAGCTCACGATTTCTTCCTCTGATGCAGTGCTGCAATGGTATGGACAGACCTACTGGAAACTTTCAACTGATACAAAAGTTTTTAAGAATTCAAATAATATGGTGGAATACATGGCCGTAAACAATTCTGGGTTTTATCTATTTGGAGATGGTGGAACAGCTTTTCAACTGGGATTGCCACTGGCTAATTTTCGAATTGCCACGTTGGGTTCCTCTGGGTAGTTCACTATCAACAGCTTTTCTATCGCTTTCTTGACGCAGGAGTTTGTGGGGCCAGTTGATGGTTGTCAAACTCCCTTGGCTTGCGGAAGAGCAGGGTTATGCACTAAGAGCACTGATTCCTCTTCACCTGTTTGTTCTTGTCCCCCTAACTTCCGCGTAGGCTCAGGTACTTCTGGTGGTTGTGTGCTGAGCAATGGATCCCATTCCTTGTCACTTGCTTGCGAAAATTCTTCAGTTGTTTCGTTTTCTAATATAGGGTATGTTCAATACTTTGGCACTTTTTACTCGGATCCGGTTATGTATAAAGGGGATTTATCTTCCTGTCAAAAATTTTGTTCCAATAACTGTTCCTGCTTGGGAATTTTGTATAAAAACACATCTGGTTCTTGCTACACGATTGAGAATGAGTTGGGGTCCATTCAGGCAAGTGATGGAGATAACAGAGACATGTTGGGGTTTATTAAAATTAACGTTGTTGAATCTAAAACTGGTACTGACGATGATAGTGGTAATAAGCAAATTTCTCAAAATGGGGGATTTCCTGTGGCAGTAGCGGTGGTGTTACCTATTATTGGATTCATTATTTTGATGGCCATAATTTTCCTTGGGTGGAGAAGATTGATTCTTCTGTCAAAGATTAAAGAAGTGAAACTAGGGAAAAACTCACCTTCTTCAGGGGACTTGGATGCCTTCTACATTCCTGGATTACCTGCAAGGTTTGATTATGAAGAGCTTGAGGAAGCCACAGAAAACTTCAAGACTCTTATTGGGTCAGGTGGGTTTGGAACTGTGTACAAGGGTGTGCTTCCTGACAAATCTGCTGTAGCAGTAAAGAAAATAGTGAACATAGGTATTCAAGGGAAGAAATATTTCTGCACTGAGATCGCTGTCATTGGAAACATCCACCACGTGAACTTGGTCAAACTGAAAGGCTTTTGTGCTCAAGGGAGACACCGGTTGTTGGTTTATGAGTACATGAACCGTGGATCCCTAGACCGAAACCTCTTCGGTGGTGGACCCGTGTTAGAATGGCAAGAGAGGTTTGATGTGGCGCTTGGAACAGCGCGTGGACTTGCTTACCTTCACAGTGGCTGTGAGCAGAAGGTTATCCATTGTGATATCAAACCCGAGAACATTCTCTTGCAAGATCAGTTTCAGGCTAAGATATCTGATTTTGGACTCTCCAAACTCCTCAGCCCCGAACAGTCCGGTCTGTTCACAACAATGAGAGGCACACGTGGTTATCTTGCTCCAGAGTGGCTCACCAACTCTGCCATTACAGAGAAAACTGACGTGTATAGCTTTGGAATGGTGCTTCTTGAACTCGTCAGTGGAAGAAAGAACTGTTATTTCAGGTCAAGAAGCCATAGCATGGATGAAAGCAACAGTGGTGGAGGCCATTCCTCGACATCATCAACAACTGGGTTGGTTTATTTTCCTCTATTTGCATTGGAGATGCATGAACAGAAGAGTTACCTGGAGTTGGCTGATCCAAGACTAGAAGGACGTGTGACATATGAAGAACTGGAGAAAGTGATTCGCATTGCCTTATGTTGCGTTCATGAAGAACCTGTACTGAGGCCAAACATGGTGACTGTTGTTGGTATGTTGGAAGGTGGGACTCCATTGCCATATCCGAGGATAGAATCTTTGAACTTCCTGCGCTTTTATGGGCGAAGGTTTACTGAGGCTTCCACAATAGCGGAAGAAAATGAGTATGGTTCT 2004 0.4351 VGASLSSAASNSNLSTGDFKLTISSSDAVLQWYGQTYWKLSTDTKVFKNSNNMVEYMAVNNSGFYLFGDGGTAFQLGLPLANFRIATLGSSGXFTINSFSIAFLTQEFVGPVDGCQTPLACGRAGLCTKSTDSSSPVCSCPPNFRVGSGTSGGCVLSNGSHSLSLACENSSVVSFSNIGYVQYFGTFYSDPVMYKGDLSSCQKFCSNNCSCLGILYKNTSGSCYTIENELGSIQASDGDNRDMLGFIKINVVESKTGTDDDSGNKQISQNGGFPVAVAVVLPIIGFIILMAIIFLGWRRLILLSKIKEVKLGKNSPSSGDLDAFYIPGLPARFDYEELEEATENFKTLIGSGGFGTVYKGVLPDKSAVAVKKIVNIGIQGKKYFCTEIAVIGNIHHVNLVKLKGFCAQGRHRLLVYEYMNRGSLDRNLFGGGPVLEWQERFDVALGTARGLAYLHSGCEQKVIHCDIKPENILLQDQFQAKISDFGLSKLLSPEQSGLFTTMRGTRGYLAPEWLTNSAITEKTDVYSFGMVLLELVSGRKNCYFRSRSHSMDESNSGGGHSSTSSTTGLVYFPLFALEMHEQKSYLELADPRLEGRVTYEELEKVIRIALCCVHEEPVLRPNMVTVVGMLEGGTPLPYPRIESLNFLRFYGRRFTEASTIAEENEYGS 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9535g00001 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vium9535g00001 668 ProSiteProfiles Protein kinase domain profile. 343 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9535g00001 668 Gene3D Transferase(Phosphotransferase) domain 1 419 635 - -
Vium9535g00001 668 SMART serkin_6 343 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9535g00001 668 ProSiteProfiles PAN/Apple domain profile. 167 250 IPR003609 -
Vium9535g00001 668 SUPERFAMILY Protein kinase-like (PK-like) 321 630 IPR011009 -
Vium9535g00001 668 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 5 635 - -
Vium9535g00001 668 Pfam Protein kinase domain 346 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9535g00001 668 CDD STKc_IRAK 349 632 - -
Vium9535g00001 668 FunFam Serine/threonine-protein kinase 419 637 - -
Vium9535g00001 668 Gene3D Phosphorylase Kinase; domain 1 329 418 - -
Vium9535g00001 668 FunFam serine/threonine-protein kinase PBS1-like 314 418 - -
Vium9535g00001 668 ProSitePatterns Protein kinases ATP-binding region signature. 349 372 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9535g00001 Vium-Chr9535 6 2009 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9535g00001 326 639 Receptor kinase-like Gene Family AT5G20050 40.979 1.08e-76 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium9535g00001 Pkinase 1.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9535g00001 - - vum:124848590 1330.08