Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9521g00011 ATGGCTCCCTCTTCAGATGTCAACCATCTTTCTCATCCATGCATATACGGGGATTATATTTCTCCTCGCTCAGAGAGAAAGTCTGGTTTCATGAAATGGCTCAGTAAACTTTTCAGAGGTGGGTCCAATAGAGGAAGGGGTGGTCGTCATCTGCATGAGCCAGCAGAGGAAAGCATAGTTTGGGGAGCTCCATCAAGAGCGTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAAGATCTAGGGCATGCAATGGCACTTTCTTCAGCCGAAGATTTAAAGAGACCAAATGCCCATCAAGGATATAGTTGGGGAGAAGACACTGAAGATGATTACTCAAAGGCACCTATGGATACCCTTAGTTCATCAGCACACCCTCCATTTGCCCCTACACCATTTTATCCCCACGAATATAGAAGAATATGTGGTGGCTGCAACCAAGAGATAATGTATGGAAATTGTTTGGGGTGCATGGATACGTATTTTCACCCAAATTGCTTTCGCTGTCATTCATGTCGCTACCCCATTACTGAGCGTGAGTTTTCCTTGTCAGGGAAGCATCCATATCATAAATCCTGCTTTAAAGAATTGACTCATCCAAAATGTGAAGTTTGCTTCCAATTTATTCCCATAAATGCAGCTGGCTTGATTGAGTACAGATGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGTTGCTGTAGTTGTGAAAGATTGGAGCCTCTGAACATAAAATACTATAGACTAGAAGATGGACGAAGCTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGACACTGGTGATTGCCAGCCTCTTTACCATTCTATCAGAGATTACTATGAAGGAATGCAGATGAGAATAGATCAACAAATTCCCATGCTTCTAGTTGAGAGAGAAGCACTTAATGAAGCTATTGTAGGAGAGAAAAATGGTTTTCTACACTTACCAGAAACAAGGGGTTTGTGCCTCTCAGAGGAGCAGACTGTGACCAGTATACATAGAAGGCCAAGAATTGGAGGCTATCGACTGATAGGGATGAGAACTCAACCTCAAAAACTGATTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTATATGGTCTTCCTAGGTTACTCACTGGCGCTATACTTGCCCATGAGTTGATGCATGGCTGGCTACGCCTTAAAGGTTACCGAAACCTTAACCCTGAAGTAGAGGAAGGCATTTGTCAGGTTCTTTCTTATATGTGGCTTGAGTCAGAAGTAATGCCTAGCTTTCAAAGCATGCCATCAACATCCACAGCTTCTGCTTCTTCTTCTTCCTCCTCCTCAAAGAAGGGTGCAAAGTCTCATGTTGAAAATAAATTGGGTGAGTTTTTCAAGAACCAGATTGCCAATGATTCTTCCCCTGCTTATGGTGGTGGCTTTAGAGCTGCTAATGAAGCTGTTAATAAATATGGTTTGCGTAGAACACTTGACCATATTCATTTGACTGGATTTTTTCCAGTGTAA 1518 0.4229 MAPSSDVNHLSHPCIYGDYISPRSERKSGFMKWLSKLFRGGSNRGRGGRHLHEPAEESIVWGAPSRALDDRARAQKEKEDLGHAMALSSAEDLKRPNAHQGYSWGEDTEDDYSKAPMDTLSSSAHPPFAPTPFYPHEYRRICGGCNQEIMYGNCLGCMDTYFHPNCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPLNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFLHLPETRGLCLSEEQTVTSIHRRPRIGGYRLIGMRTQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSFQSMPSTSTASASSSSSSSKKGAKSHVENKLGEFFKNQIANDSSPAYGGGFRAANEAVNKYGLRRTLDHIHLTGFFPV 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9521g00011 505 CDD LIM_DA1 142 194 - -
Vium9521g00011 505 MobiDBLite consensus disorder prediction 431 450 - -
Vium9521g00011 505 FunFam Protein DA1-related 2 130 195 - -
Vium9521g00011 505 MobiDBLite consensus disorder prediction 431 449 - -
Vium9521g00011 505 ProSiteProfiles LIM domain profile. 140 200 IPR001781 -
Vium9521g00011 505 PANTHER PROTEIN DA1-RELATED 2 33 504 IPR045218 -
Vium9521g00011 505 SMART lim_4 141 193 IPR001781 -
Vium9521g00011 505 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 167 - -
Vium9521g00011 505 ProSitePatterns LIM zinc-binding domain signature. 142 176 IPR001781 -
Vium9521g00011 505 Pfam LIM domain 142 195 IPR001781 -
Vium9521g00011 505 Gene3D Cysteine Rich Protein 129 199 - -
Vium9521g00011 505 MobiDBLite consensus disorder prediction 87 110 - -
Vium9521g00011 505 Pfam Protein DA1 291 499 IPR022087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9521g00011 Vium-Chr9521 56288 61200 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium9521g00011 DA1-like 1e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9521g00011 - - gmx:100784976 1002.28