Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9521g00010 ATGGCTCCCTCTTCAGATGTCAACCATCTTTCTCATCCATGCATATACGGGGATTATATTTCTCCTCGCTCAGAGAGAAAGTCTGGTTTCATGAAATGGCTCAGTAAACTTTTCAGAGGTGGGTCCAATAGAGGAAGGGGTGGTCGTCATCTGCATGAGCCAGCAGAGGAAAGCATAGTTTGGGGAGCTCCATCAAGAGCGTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAAGATCTAGGGCATGCAATGGCACTTTCTTCAGCCGAAGATTTAAAGAGACCAAATGCCCATCAAGGATATAGTTGGGGAGAAGACACTGAAGATGATTACTCAAAGGCACCTATGGATACCCTTAGTTCATCAGCACACCCTCCATTTGCCCCTACACCATTTTATCCCCACGAATATAGTTTGTCATTGAACAGAAGAATATGTGGTGGCTGCAACCAAGAGATAATGTATGGAAATTGTTTGGGGTGCATGGATACGTATTTTCACCCAAATTGCTTTCGCTGTCATTCATGTCGCTACCCCATTACTGAGCGTGAGTTTTCCTTGTCAGGGAAGCATCCATATCATAAATCCTGCTTTAAAGAATTGACTCATCCAAAATGTGAAGTTTGCTTCCAATTTATTCCCATAAATGCAGCTGGCTTGATTGAGTACAGATGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGTTGCTGTAGTTGTGAAAGATTGGAGCCTCTGAACATAAAATACTATAGACTAGAAGATGGACGAAGCTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGACACTGGTGATTGCCAGCCTCTTTACCATTCTATCAGAGATTACTATGAAGGAATGCAGATGAGAATAGATCAACAAATTCCCATGCTTCTAGTTGAGAGAGAAGCACTTAATGAAGCTATTGTAGGAGAGAAAAATGGTTTTCTACACTTACCAGAAACAAGGGGTTTGTGCCTCTCAGAGGAGCAGACTGTGACCAGTATACATAGAAGGCCAAGAATTGGAGGCTATCGACTGATAGGGATGAGAACTCAACCTCAAAAACTGATTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTATATGGTCTTCCTAGGTTACTCACTGGCGCTATACTTGCCCATGAGTTGATGCATGGCTGGCTACGCCTTAAAGGTTACCGAAACCTTAACCCTGAAGTAGAGGAAGGCATTTGTCAGGTTCTTTCTTATATGTGGCTTGAGTCAGAAGTAATGCCTAGCTTTCAAAGCATGCCATCAACATCCACAGCTTCTGCTTCTTCTTCTTCCTCCTCCTCAAAGAAGGGTGCAAAGTCTCATGTTGAAAATAAATTGGGTGAGTTTTTCAAGAACCAGATTGCCAATGATTCTTCCCCTGCTTATGGTGGTGGCTTTAGAGCTGCTAATGAAGCTGTTAATAAATATGGTTTGCGTAGAACACTTGACCATATTCATTTGACTGGATTTTTTCCAGTGTAA 1533 0.422 MAPSSDVNHLSHPCIYGDYISPRSERKSGFMKWLSKLFRGGSNRGRGGRHLHEPAEESIVWGAPSRALDDRARAQKEKEDLGHAMALSSAEDLKRPNAHQGYSWGEDTEDDYSKAPMDTLSSSAHPPFAPTPFYPHEYSLSLNRRICGGCNQEIMYGNCLGCMDTYFHPNCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPLNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFLHLPETRGLCLSEEQTVTSIHRRPRIGGYRLIGMRTQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSFQSMPSTSTASASSSSSSSKKGAKSHVENKLGEFFKNQIANDSSPAYGGGFRAANEAVNKYGLRRTLDHIHLTGFFPV 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9521g00010 510 SMART lim_4 146 198 IPR001781 -
Vium9521g00010 510 ProSiteProfiles LIM domain profile. 145 205 IPR001781 -
Vium9521g00010 510 MobiDBLite consensus disorder prediction 87 121 - -
Vium9521g00010 510 ProSitePatterns LIM zinc-binding domain signature. 147 181 IPR001781 -
Vium9521g00010 510 MobiDBLite consensus disorder prediction 436 455 - -
Vium9521g00010 510 PANTHER PROTEIN DA1-RELATED 2 33 509 IPR045218 -
Vium9521g00010 510 FunFam Protein DA1-related 2 134 200 - -
Vium9521g00010 510 MobiDBLite consensus disorder prediction 436 454 - -
Vium9521g00010 510 Gene3D Cysteine Rich Protein 142 206 - -
Vium9521g00010 510 Pfam Protein DA1 296 504 IPR022087 -
Vium9521g00010 510 CDD LIM_DA1 147 199 - -
Vium9521g00010 510 Pfam LIM domain 147 200 IPR001781 -
Vium9521g00010 510 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 141 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9521g00010 Vium-Chr9521 56286 61200 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium9521g00010 DA1-like 1.1e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9521g00010 - - gmx:100784976 996.112