Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9521g00008 ATGAGCTCACAGGGGCAAGGGATGGATGAGACGGTTCTGGATGACATAATCCGCCGCTTAACGGAGGTCCGATTGGCCCGACCCGGCAAGCAGGTTCAGCTCTCCGAGTCAGAGATCAAGCAACTCTGCGTCGCTTCTCGAGACATCTTCATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTGGTGATATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAGTATGGGGGTTTGCCTCCTAAAGCAAATTATCTCTTTTTGGGGGACTATGTGGACCGTGGGAAGCAGAGCTTAGAAACCATATGTCTTTTGCTTGCATATAAAATCAAATATCCAGAAAACTTTTTCCTGTTGAGGGGGAATCATGAGTGTGCTTCCATTAATAGGATTTATGGGTTTTATGATGAATGTAAGAGAAGGTTTAATGTGAGGCTTTGGAAAGCCTTCACCGAGTGTTTTAACTGCCTTCCTGTGGCTGCCCTTATAGATGATAAAATATTGTGCATGCATGGTGGTCTTTCCCCTGAACTCACAAACTTGGATGAAATCAGGAATATAATCCGTCCTACTGCAATTCCCGACACTGGCTTGCTTTGTGATTTGCTTTGGTCTGATCCTGGTAGGGATGTGAAGGGCTGGGGAATGAATGACAGAGGAGTGTCCTACACCTTTGGCCCTGATAAGGTGGCTGAATTTTTGACGAAACATGACTTGGATCTCATTTGTCGTGCTCATCAGGTTGTAGAGGACGGATTCTCAAGCCTGCAGAGAAAAAAACAAAGTTTGTGA 810 0.4519 MSSQGQGMDETVLDDIIRRLTEVRLARPGKQVQLSESEIKQLCVASRDIFINQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGLPPKANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKAFTECFNCLPVAALIDDKILCMHGGLSPELTNLDEIRNIIRPTAIPDTGLLCDLLWSDPGRDVKGWGMNDRGVSYTFGPDKVAEFLTKHDLDLICRAHQVVEDGFSSLQRKKQSL 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9521g00008 269 FunFam Serine/threonine-protein phosphatase 5 268 - -
Vium9521g00008 269 Pfam Serine-threonine protein phosphatase N-terminal domain 13 60 IPR031675 -
Vium9521g00008 269 Gene3D - 5 268 IPR029052 -
Vium9521g00008 269 SMART pp2a_7 34 269 IPR006186 GO:0016787
Vium9521g00008 269 Pfam Calcineurin-like phosphoesterase 62 254 IPR004843 GO:0016787
Vium9521g00008 269 PRINTS Serine/threonine phosphatase family signature 91 118 IPR006186 GO:0016787
Vium9521g00008 269 PRINTS Serine/threonine phosphatase family signature 187 214 IPR006186 GO:0016787
Vium9521g00008 269 PRINTS Serine/threonine phosphatase family signature 62 89 IPR006186 GO:0016787
Vium9521g00008 269 PRINTS Serine/threonine phosphatase family signature 244 264 IPR006186 GO:0016787
Vium9521g00008 269 PRINTS Serine/threonine phosphatase family signature 158 184 IPR006186 GO:0016787
Vium9521g00008 269 PRINTS Serine/threonine phosphatase family signature 124 148 IPR006186 GO:0016787
Vium9521g00008 269 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 16 263 - -
Vium9521g00008 269 ProSitePatterns Serine/threonine specific protein phosphatases signature. 125 130 IPR006186 GO:0016787
Vium9521g00008 269 SUPERFAMILY Metallo-dependent phosphatases 23 266 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9521g00008 Vium-Chr9521 38382 43015 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9521g00008 63 250 Calmodulin-binding Proteins AT5G63870 31.839 1.90e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9521g00008 K06269 - gmx:100807069 518.85