Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium951g00013 ATGGCAATTCCACTACCTTCCACGCTTGTCATCATAGCCAGCCTATTTCTTCTCTCCCCAAAAATTTCCTCTGAAACCAACACCATCACTCAGCTTCAGCCACTTACCTATGGAACCAACTTGGTTTCTGAGGGAGGAACCTTCGAGTTAGGTTTCTTCATCCTAGGTACGTCAAAAAACCTCTACCTAGGAATATGGTTCAAAAACATCCCACAAAAAACCATTGTTTGGGTTGCCAACCGCAACAATCCAATCAATAACACCAGCAGCAACTCCACCGAGTTAACCATATCAAAAGAAGGAAACCTGGTTCTTCTCAGCAGCAACAACACCGTTCACTGGTCAACAAATGCAACAACAAAATCTAAATCGGTCAACGTCGTAGCACGGCTATTGGAAACCGGCAACTTAGTCGTTAGAGATGAAAACGACAACAATTTTGAAAACTACTTGTGGCAAAGCTTTGACTATCCTTCGGACACACTTTTACCAGGAATGAAGCTAGGATGGGAAGTAGCAACAGGTCTCAACAGATACATCACTTCTTGGAACAATTGGGAAGACCCATCTTCTGGTCATTTCTCTTATGGAGTTTCAAGACGAAACGTCCCAGACATGCAAATTTGGAACGGTTCATCAGTGATCTACCGAAGTGGCCCTTGGAGTGGGTTTCGATTCAGCGCCACACCGTTATTTAAGCGTCGTCCATTGGTTAATATCAACTTCGTTGATAATCCTAGGGAAAGTTATTACCAAGTTTTTCCGCGAAATAGTTCGATGATTCTGAGAACGGTGATTAACCAAACGGCTAACGCTCTTCTGCGTTTCATTTGGGAGGAAGAAAGTCAAAACTGGAAGCTTGATTTAGTTATCCCCAGAGACGGTTTTTGCGGCTATGACTACTGTGGCTCTTTCGGGTACTGTGCTTTGACGGGTAACACTTCAACTTGCGAGTGTTTACGAGGGTTTAAGCCAAGATCGGTGGAAAACTGGTGTGCAAAGATTTGGAATGAAGGGTGCGTGAATAGCAGTGAATCATGGAGGTGTCGGGTGAAGAACAAAGACGGGTTCGTTAAGGTTAGTAACATGAATATTCCCGACACTAAAACATCGTGGATGAATCGAAGTATGACAATTGATGAATGCAAGGCTAAGTGTTGGGCAAATTGTTCGTGCACGGCTTATGCTAATTCTGATATCACTGAAACTGGAAGTGGTTATAGCGGTTGCATCATCTGGTTCGGCGATCTGTTGGATTTGAGATTGCTTCCAGATGCAGGGCAAGATCTATATGTCAGATTGGATATCTCCACCATTGAAAATAAAGATTATTCAAAGAAAGTGGTGATCGGGGTCACAAGCTCAGTTTCATCGATTGTTGCGGTGCTTGTAATATTCACATTCCTTTACCGTAGAAGAAAAGGTAAAGATAAAAAAGTAAAGATAAACGGGAGTGAAGATGATCTAGAGCTACCTTTGTTCGATTTTGATACAATAGCATGTGCTACTAATGACTTCTCAGAGGACCACATGCTTGGCCAAGGTGGTTTTGGTCCTGTATACAAAGGGACATTATCGGATGGAAAGAATGTTGCAGTGAAAAGGCTCTCTGATACATCTGCACAAGGACTCAAGGAATTTAAAAATGAAGTTATATTTTGTTCTAAACTTCAACATCGGAATCTTGTCAAAGTTCTTGGATATTGCATTGAAGAACAAGAAAAATTACTCATTTATGAATACATGCCAAACAAAAGCTTAAACTTCTTTCTTTTTGATCATTCTCAAAGCATACTCTTAGATTGGTCTACACGATTAAATATTATAACTGGAATTGCTCGAGGACTTCTTTATCTTCATCAAGATTCTAGATTAAGAATCATACACAGAGATTTAAAATCGAGCAATATCTTGTTAGATGATGATATGAATCCAAAGATTTCTGATTTTGGATTAGCAAGAGGAGGTAGAGGTGATCAGATTGAAGGGAATACAAGGAGAGTTGTGGGTACATATGGTTATATGGCTCCTGAATATGCAATTGGTGGAGTATTCTCTGTTAAATCTGATGTTTATAGCTTTGGAGTTTTATTATTAGAGATTTTAAGTGGAAAGAAAAACAAAGGATTTTCCTACTCAATCCACAACTATAACCTTATTGAACATGCATGGCGGTGTTGGAAAGAAAGCATCCCAATTGAATTCATCGATACTTGTTTAAGGGACTCATACATTCTATCTGAAGCCTTACGATGTATTCATATTGGTCTTTTATGCATACAACATCAACCTAATGATAGACCGAATATGACTACTGTAGTTACAATGTTAACGAGTGAAAGTACTTTACCACAACCCGAAAAACTTGTTTTCTTAATGCAAAGGGTTCTAGTTGAGGAAGATGTTGTACAAAATATGTATTGTCCAACAAATGAAGTTACAATTTCAGATGTGGAACCAAGATAA 2466 0.3946 MAIPLPSTLVIIASLFLLSPKISSETNTITQLQPLTYGTNLVSEGGTFELGFFILGTSKNLYLGIWFKNIPQKTIVWVANRNNPINNTSSNSTELTISKEGNLVLLSSNNTVHWSTNATTKSKSVNVVARLLETGNLVVRDENDNNFENYLWQSFDYPSDTLLPGMKLGWEVATGLNRYITSWNNWEDPSSGHFSYGVSRRNVPDMQIWNGSSVIYRSGPWSGFRFSATPLFKRRPLVNINFVDNPRESYYQVFPRNSSMILRTVINQTANALLRFIWEEESQNWKLDLVIPRDGFCGYDYCGSFGYCALTGNTSTCECLRGFKPRSVENWCAKIWNEGCVNSSESWRCRVKNKDGFVKVSNMNIPDTKTSWMNRSMTIDECKAKCWANCSCTAYANSDITETGSGYSGCIIWFGDLLDLRLLPDAGQDLYVRLDISTIENKDYSKKVVIGVTSSVSSIVAVLVIFTFLYRRRKGKDKKVKINGSEDDLELPLFDFDTIACATNDFSEDHMLGQGGFGPVYKGTLSDGKNVAVKRLSDTSAQGLKEFKNEVIFCSKLQHRNLVKVLGYCIEEQEKLLIYEYMPNKSLNFFLFDHSQSILLDWSTRLNIITGIARGLLYLHQDSRLRIIHRDLKSSNILLDDDMNPKISDFGLARGGRGDQIEGNTRRVVGTYGYMAPEYAIGGVFSVKSDVYSFGVLLLEILSGKKNKGFSYSIHNYNLIEHAWRCWKESIPIEFIDTCLRDSYILSEALRCIHIGLLCIQHQPNDRPNMTTVVTMLTSESTLPQPEKLVFLMQRVLVEEDVVQNMYCPTNEVTISDVEPR 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium951g00013 821 PIRSF SRK 1 821 IPR024171 GO:0004674
Vium951g00013 821 Gene3D Transferase(Phosphotransferase) domain 1 582 789 - -
Vium951g00013 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Vium951g00013 821 SMART ntp_6 352 434 IPR003609 -
Vium951g00013 821 SMART serkin_6 506 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium951g00013 821 SMART blect_4 32 158 IPR001480 -
Vium951g00013 821 Pfam PAN-like domain 349 420 IPR003609 -
Vium951g00013 821 Gene3D - 21 155 IPR036426 -
Vium951g00013 821 SUPERFAMILY Protein kinase-like (PK-like) 491 799 IPR011009 -
Vium951g00013 821 Pfam D-mannose binding lectin 74 183 IPR001480 -
Vium951g00013 821 ProSiteProfiles PAN/Apple domain profile. 349 435 IPR003609 -
Vium951g00013 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 582 785 - -
Vium951g00013 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 155 - -
Vium951g00013 821 Gene3D Phosphorylase Kinase; domain 1 467 581 - -
Vium951g00013 821 CDD PAN_AP_plant 352 434 - -
Vium951g00013 821 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 768 - -
Vium951g00013 821 ProSiteProfiles Bulb-type lectin domain profile. 26 152 IPR001480 -
Vium951g00013 821 Pfam S-locus glycoprotein domain 216 326 IPR000858 GO:0048544
Vium951g00013 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 189 IPR036426 -
Vium951g00013 821 CDD STKc_IRAK 512 778 - -
Vium951g00013 821 Pfam Protein tyrosine and serine/threonine kinase 509 777 IPR001245 GO:0004672|GO:0006468
Vium951g00013 821 CDD B_lectin 33 158 IPR001480 -
Vium951g00013 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 470 581 - -
Vium951g00013 821 ProSiteProfiles Protein kinase domain profile. 506 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium951g00013 Vium-Chr951 162050 166307 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium951g00013 472 821 Receptor kinase-like Gene Family AT4G11530 53.315 1.75e-123 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium951g00013 PK_Tyr_Ser-Thr 6.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium951g00013 - - pvu:PHAVU_011G152100g 1322.76