Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium951g00012 ATGAAGATTGGATGGAACCTTAAGAAGGGTCTCATCTGGCGATTAACCGCGTGGAAGAACTGGGATGACCCTTCTCCAGGGAACTTCAGTTGGGGTATGGAGCTTGGTAACACTCGTGAACTGGTTATGTGGAAAGGTTCTAGTGAGTATTATAGAAGTGGCCCTTGGAATGGTGTCAGATTCAGTGGCAAAAACACTCCCCGTTACAACTTAGAATTTAATTCCACTCCGGATGAAGAGTATTATACATACAAATTTGTGAGCAATTCATTTATTACAAGGGTTGTTTTGAACCAATCCCTTTATTCTCGGCAACGCTATAATTGGATTAAAGAGAACCAAACTTGGAGTCTTTATTCCGTGGTTCCGAAAGGTAAATGTGATAGCTACAATGTTTGTGGTCCCTATGGGAGTTGTAATGGTGGTGAGTCATTGCACTGCGAGTGTTTAATGGGGTTCAAACCGAAATCAGTACAAAATTATGAAGCATTGGATTGGAGTCAGGGATGTGAGCCTAGTGGACCGTGGAGCTGTGGTACAAAAGACAATAGTTTTCAAAAATTTAGTGGGCTGAAATTGCCAGATACTACAAGGTCTTGGATTGATCCAAATTTGACATTTGAGAATTGCAAAGTCAAATGCTTGGAAAATTGTTCTTGCATTGCATATGCAAACTTAGATATCAGAGATGGTGGAGGTTGTATCATTTGGTTTGAAGCTTTGGTTGATTTAATGGTCGCTTCACTCCCGGGGCCAGATCTATATATTCGAATGACTGCTTCGGAAATAGAAAAGAGAGGGCATAAGATACTGGTAGCAGTGCTGATTCCAGTTATTTTCCTGACTTTTGTGATTGTTTTCATATTCACATATAGTTATTGGCGCAAAAGAAAGCTTAGAGAGAAGACATCAGAAGAAAGTAAAAGTGAAAGCAGTCAAGGAGACTTAGATCTTCCTTTCTTTGATTTTCCTGCAATAATTCGTGCCACCAACGATTTCTCAAGAGACAAGATGCTTGGCCAAGGTGGTTTTGGACCTGTGTATAGGGGTACACTCCCAGATGGACAAGAGATCGCTGCCAAGAGGCTTTGTAGTAATACTGGCCAAGGAATTCAAGAATTCAAGAATGAAGTTATACTGTGTGCCAAACTACAGCACAGGAATCTTGTAAAGCTTCTCGGTTGTTCCATTCAAGGAGAAGAGAAAGTTTTGGTCTATGAATACATGCCCAACAAAAGCTTAGACTCCTTTCTCTTTGATTCTTCCAAAAAAGGAATCCTAAACTGGTCAAAGCGGTTGAACATTATACATGGCATTGCTCGTGGACTTCTATATCTTCACCAAGATTCTAGATTAAGAATCATTCATAGAGAAATGAAAGCGAGTAATATCCTGTTAGACAATGAGCTGAATCCAAAAATTTCTGATTTTGGTATAGCACGAATGTTTAGAGGAAATCAAACAGAAGGAAATACAAAACAAGTTGTTGGGACATATGGGTACATGGCACCAGAATACACAATTAGTGGGCTGTTCTCTATCAAATCTGATGTATACAGCTTTGGAGTACTGCTACTAGAGATAGTAAGTGGCAAGAAAAATGGAGGAATTTTCTTTCCAGATCACGGACTTAATCTATTAGAACATGCTTGGAGATTGTGGAAAGAGGACACTCCTATGAAATTAGTAGATGCTTCTTTGGGTGACTCCTTTAACATATCTGAAGCATTACGTTGCATTCATGTTGGTCTACTATGTGTGCAGCTACATCCAGATAACAGGCCAAATATGGCATCTGTGATTTTTATGTTGAGTGGTGAAAATATTTTGCGAGAACCTAAGGAACCTGGTTTTCTTGTTGCAAGGATGAAAACTGCTGGCGAATGTTCAACTAGCAATGCAATTAGTACTTGCACTAATGAATTAACTATAACCCTGCCACAGGCTAGGTAG 1953 0.3968 MKIGWNLKKGLIWRLTAWKNWDDPSPGNFSWGMELGNTRELVMWKGSSEYYRSGPWNGVRFSGKNTPRYNLEFNSTPDEEYYTYKFVSNSFITRVVLNQSLYSRQRYNWIKENQTWSLYSVVPKGKCDSYNVCGPYGSCNGGESLHCECLMGFKPKSVQNYEALDWSQGCEPSGPWSCGTKDNSFQKFSGLKLPDTTRSWIDPNLTFENCKVKCLENCSCIAYANLDIRDGGGCIIWFEALVDLMVASLPGPDLYIRMTASEIEKRGHKILVAVLIPVIFLTFVIVFIFTYSYWRKRKLREKTSEESKSESSQGDLDLPFFDFPAIIRATNDFSRDKMLGQGGFGPVYRGTLPDGQEIAAKRLCSNTGQGIQEFKNEVILCAKLQHRNLVKLLGCSIQGEEKVLVYEYMPNKSLDSFLFDSSKKGILNWSKRLNIIHGIARGLLYLHQDSRLRIIHREMKASNILLDNELNPKISDFGIARMFRGNQTEGNTKQVVGTYGYMAPEYTISGLFSIKSDVYSFGVLLLEIVSGKKNGGIFFPDHGLNLLEHAWRLWKEDTPMKLVDASLGDSFNISEALRCIHVGLLCVQLHPDNRPNMASVIFMLSGENILREPKEPGFLVARMKTAGECSTSNAISTCTNELTITLPQAR 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium951g00012 650 CDD EGF_CA 127 157 - -
Vium951g00012 650 Pfam S-locus glycoprotein domain 51 157 IPR000858 GO:0048544
Vium951g00012 650 CDD PAN_AP_plant 177 257 - -
Vium951g00012 650 CDD STKc_IRAK 339 604 - -
Vium951g00012 650 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 62 628 - -
Vium951g00012 650 Gene3D Phosphorylase Kinase; domain 1 292 408 - -
Vium951g00012 650 SUPERFAMILY Protein kinase-like (PK-like) 314 604 IPR011009 -
Vium951g00012 650 Pfam Protein tyrosine and serine/threonine kinase 336 541 IPR001245 GO:0004672|GO:0006468
Vium951g00012 650 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 409 612 - -
Vium951g00012 650 Pfam PAN-like domain 178 244 IPR003609 -
Vium951g00012 650 Gene3D Transferase(Phosphotransferase) domain 1 409 614 - -
Vium951g00012 650 SMART ntp_6 180 258 IPR003609 -
Vium951g00012 650 ProSiteProfiles Protein kinase domain profile. 333 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium951g00012 650 ProSiteProfiles PAN/Apple domain profile. 178 259 IPR003609 -
Vium951g00012 650 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 296 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium951g00012 Vium-Chr951 136396 139472 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium951g00012 204 619 Receptor kinase-like Gene Family AT4G23320 47.847 5.48e-127 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium951g00012 PK_Tyr_Ser-Thr 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium951g00012 - - qsu:112016032 765.377