Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium951g00011 ATGGTCTGTTACACCTTTCTGTTTCTTTTTGCCAAAATAAGCATGTTGTTGCCTTCAATTTCGTCTGCAACTGATACCTTTAACGGGTCGCAGTCCCTTCCTGATGGCGCAACCTTGGTGTCAAAAGATGGAACGTTTGAAATGGGTTTCTTCAGTCCAAGCAACAGTAATACAACTACAAATCGCTATCTTGGAATATGGTACAAAAGTATCCCAGTTAAAACCGTTGTTTGGGTTGCCAACCGTGAAAACCCAGTTAAGGATAACTCCAGCAAGTTGAGCATAAGCACACAAGGAAAACTTGTGATCCTCAGCAATAACAGCACTCTCGTTTGGTCACCGAACACAGCGGAAGTAACAAAAGCACAGAGTATAATTGTTCAGCTTTTGGACTCAGGGAACTTGGTGGTAAGATATGAGAATGATTCAAATCCACGGAATTTCTTGTGGGAAAGTTTTGACTATCCTTGTGATACTTTTCTTCCAGGAATGAAGATTGGATGGAACCTTAAGAAGGGTCTCATCTGGCGATTAACCGCGTGGAAGAACTGGGATGACCCTTCTCCAGGGAACTTCAGTTGGGGTATGGAGCTTGGTAACACTCGTGAACTGGTTATGTGGAAAGGTTCTAGTGAGTATTATAGAAGTGGCCCTTGGAATGGTGTCAGATTCAGTGGCAAAAACACTCCCCGTTACAACTTAGAATTTAATTCCACTCCGGATGAAGAGTATTATACATACAAATTTGTGAGCAATTCATTTATTACAAGGGTTGTTTTGAACCAATCCCTTTATTCTCGGCAACGCTATAATTGGATTAAAGAGAACCAAACTTGGAGTCTTTATTCCGTGGTTCCGAAAGGTAAATGTGATAGCTACAATGTTTGTGGTCCCTATGGGAGTTGTAATGGTGGTGAGTCATTGCACTGCGAGTGTTTAATGGGGTTCAAACCGAAATCAGTACAAAATTATGAAGCATTGGATTGGAGTCAGGGATGTGAGCCTAGTGGACCGTGGAGCTGTGGTACAAAAGACAATAGTTTTCAAAAATTTAGTGGGCTGAAATTGCCAGATACTACAAGGTCTTGGATTGATCCAAATTTGACATTTGAGAATTGCAAAGTCAAATGCTTGGAAAATTGTTCTTGCATTGCATATGCAAACTTAGATATCAGAGATGGTGGAGGTTGTATCATTTGGTTTGAAGCTTTGGTTGATTTAATGGTCGCTTCACTCCCGGGGCCAGATCTATATATTCGAATGACTGCTTCGGAAATAGAAAAGAGAGGGCATAAGATACTGGTAGCAGTGCTGATTCCAGTTATTTTCCTGACTTTTGTGATTGTTTTCATATTCACATATAGTTATTGGCGCAAAAGAAAGCTTAGAGAGAAGACATCAGAAGAAAGTAAAAGTGAAAGCAGTCAAGGAGACTTAGATCTTCCTTTCTTTGATTTTCCTGCAATAATTCGTGCCACCAACGATTTCTCAAGAGACAAGATGCTTGGCCAAGGTGGTTTTGGACCTGTGTATAGGGGTACACTCCCAGATGGACAAGAGATCGCTGCCAAGAGGCTTTGTAGTAATACTGGCCAAGGAATTCAAGAATTCAAGAATGAAGTTATACTGTGTGCCAAACTACAGCACAGGAATCTTGTAAAGCTTCTCGGTTGTTCCATTCAAGGAGAAGAGAAAGTTTTGGTCTATGAATACATGCCCAACAAAAGCTTAGACTCCTTTCTCTTTGATTCTTCCAAAAAAGGAATCCTAAACTGGTCAAAGCGGTTGAACATTATACATGGCATTGCTCGTGGACTTCTATATCTTCACCAAGATTCTAGATTAAGAATCATTCATAGAGAAATGAAAGCGAGTAATATCCTGTTAGACAATGAGCTGAATCCAAAAATTTCTGATTTTGGTATAGCACGAATGTTTAGAGGAAATCAAACAGAAGGAAATACAAAACAAGTTGTTGGGACATATGGGTACATGGCACCAGAATACACAATTAGTGGGCTGTTCTCTATCAAATCTGATGTATACAGCTTTGGAGTACTGCTACTAGAGATAGTAAGTGGCAAGAAAAATGGAGGAATTTTCTTTCCAGATCACGGACTTAATCTATTAGAACATGCTTGGAGATTGTGGAAAGAGGACACTCCTATGAAATTAGTAGATGCTTCTTTGGGTGACTCCTTTAACATATCTGAAGCATTACGTTGCATTCATGTTGGTCTACTATGTGTGCAGCTACATCCAGATAACAGGCCAAATATGGCATCTGTGATTTTTATGTTGAGTGGTGAAAATATTTTGCGAGAACCTAAGGAACCTGGTTTTCTTGTTGCAAGGATGAAAACTGCTGGCGAATGTTCAACTAGCAATGCAATTAGTACTTGCACTAATGAATTAACTATAACCCTGCCACAGGCTAGGTAG 2442 0.4005 MVCYTFLFLFAKISMLLPSISSATDTFNGSQSLPDGATLVSKDGTFEMGFFSPSNSNTTTNRYLGIWYKSIPVKTVVWVANRENPVKDNSSKLSISTQGKLVILSNNSTLVWSPNTAEVTKAQSIIVQLLDSGNLVVRYENDSNPRNFLWESFDYPCDTFLPGMKIGWNLKKGLIWRLTAWKNWDDPSPGNFSWGMELGNTRELVMWKGSSEYYRSGPWNGVRFSGKNTPRYNLEFNSTPDEEYYTYKFVSNSFITRVVLNQSLYSRQRYNWIKENQTWSLYSVVPKGKCDSYNVCGPYGSCNGGESLHCECLMGFKPKSVQNYEALDWSQGCEPSGPWSCGTKDNSFQKFSGLKLPDTTRSWIDPNLTFENCKVKCLENCSCIAYANLDIRDGGGCIIWFEALVDLMVASLPGPDLYIRMTASEIEKRGHKILVAVLIPVIFLTFVIVFIFTYSYWRKRKLREKTSEESKSESSQGDLDLPFFDFPAIIRATNDFSRDKMLGQGGFGPVYRGTLPDGQEIAAKRLCSNTGQGIQEFKNEVILCAKLQHRNLVKLLGCSIQGEEKVLVYEYMPNKSLDSFLFDSSKKGILNWSKRLNIIHGIARGLLYLHQDSRLRIIHREMKASNILLDNELNPKISDFGIARMFRGNQTEGNTKQVVGTYGYMAPEYTISGLFSIKSDVYSFGVLLLEIVSGKKNGGIFFPDHGLNLLEHAWRLWKEDTPMKLVDASLGDSFNISEALRCIHVGLLCVQLHPDNRPNMASVIFMLSGENILREPKEPGFLVARMKTAGECSTSNAISTCTNELTITLPQAR 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium951g00011 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 187 IPR036426 -
Vium951g00011 813 CDD PAN_AP_plant 340 420 - -
Vium951g00011 813 Pfam D-mannose binding lectin 75 182 IPR001480 -
Vium951g00011 813 SUPERFAMILY Protein kinase-like (PK-like) 477 767 IPR011009 -
Vium951g00011 813 PIRSF SRK 1 813 IPR024171 GO:0004674
Vium951g00011 813 Pfam PAN-like domain 341 407 IPR003609 -
Vium951g00011 813 Gene3D - 19 153 IPR036426 -
Vium951g00011 813 CDD STKc_IRAK 502 767 - -
Vium951g00011 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 153 - -
Vium951g00011 813 CDD B_lectin 30 156 IPR001480 -
Vium951g00011 813 ProSiteProfiles Protein kinase domain profile. 496 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium951g00011 813 SMART blect_4 30 156 IPR001480 -
Vium951g00011 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 572 775 - -
Vium951g00011 813 Pfam Protein tyrosine and serine/threonine kinase 499 704 IPR001245 GO:0004672|GO:0006468
Vium951g00011 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 459 571 - -
Vium951g00011 813 Pfam S-locus glycoprotein domain 214 320 IPR000858 GO:0048544
Vium951g00011 813 CDD EGF_CA 290 320 - -
Vium951g00011 813 ProSiteProfiles Bulb-type lectin domain profile. 24 150 IPR001480 -
Vium951g00011 813 ProSiteProfiles PAN/Apple domain profile. 341 422 IPR003609 -
Vium951g00011 813 SMART ntp_6 343 421 IPR003609 -
Vium951g00011 813 Gene3D Transferase(Phosphotransferase) domain 1 572 777 - -
Vium951g00011 813 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 758 - -
Vium951g00011 813 Gene3D Phosphorylase Kinase; domain 1 456 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium951g00011 Vium-Chr951 136396 139801 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium951g00011 367 782 Receptor kinase-like Gene Family AT4G23320 47.847 2.86e-125 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium951g00011 PK_Tyr_Ser-Thr 1.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium951g00011 - - gmx:100786696 935.636