Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium951g00002 ATGAACGAGAAGGCCAACGTTTCCAAAGAGCTCAACGCCAAACACAAGAAGATTTTAGAAGGACTTCTTAAACTACCAGAGAATAAGGAGTGTGCTGACTGCAAAGCTAAGGGCCCAAGATGGGCTAGTGTCAATCTTGGCATTTTTATATGCATGCAGTGTTCTGGTATACATAGAAGTCTTGGGGTACACATATCAAAGGTTCGCTCAGCAACTTTGGACACTTGGCTTCCAGAGCAGGTTGCATTCATTCAACATATGGGAAATGAGAAGGCAAACAATTACTGGGAAGCAGAATTACCCCCAAATTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTGCAAGGAATGAGAAACCAAAATCACCTTCTAGTTTTCGAGAAGAGAAAAGGCCCGTGGAAAGGGTTGGCCATAATCATGCAGTTGTGTCTGAGAATACTTTTGAGGATAGGAAGAAAATCAAACCTTCAAATGCTATTCCTGCTACAAGAATTTGTGTTCCTGCTCCTCCCAGAGGGCCTGAACTGGTAACTCCCGTGGGAAAACCTCAACATGTTGATAAAGCAGAACCTGTTTCACCACCACCACAAGTTGAAACTTCAAAACAGACTACTGACACAACACAAAACTCCCCTCCAAAAGTTGACTTTTCTACGGATCTTTTTGACATGTTATCCATGGATGATCCAAGTGAAAAGGGCTCAGGTGCAGCTGAAGCTATTGCTGATGATAATAACTGGGCAGGTTTTCAGTCTGCTACAGAGGCATTGCCAGCTGCGAAGAATGATACCACAAAATCAGTTGACAGTAGACCTCAGTCCACTTCTGGAATTGAGGATTTATTTAAAGACTCACCTTCAGTTACAACAAGTTCAACTCCAGAAAACCCACAAAAAGATGTAAAAAATGATATCATGAGCCTCTTTGAGAAGGGAAATGTTGTGTCTCCATTTGCAATGCATCAACAGCAGCTAGCCATGCTGGCACAGCAACAGACTCTTCTAATGGCTGCTGCTGCTAAATCTGGTGGTGTGGATTCCAAGTACTTGGCCAGCTTACAACAACAGTCTCTTCTAATGGCTGCTGCTGCTAAACCTGCCAGTGGGGATTCCAAAAACCCAGCTGGCATACAAAAACCTGGATCCAATATTCCTGTCCAAAGTTGGCCAGCTGCTGGCTATCCAGTCCCTGGTATAATGCCCATGGGAAATCAGGAAGAGTTGCAAAAACTAATGCAGACAATGAACTTGACTGCAGCGCATTCAGCAGGGAGTTCAGTTCAGTATCCACAATCTAGTTACTATCCTATGGGGCAAGTTGCTCCAGTTAATGGTTCGTCTACAACGGGTGGAGCAAGTAAACCTGAGTCGGGATCTCTGGTATCATCAGCATATCCAATATCATCGACCACTTCAAAGACAGGGAGCGATTATGATTTCTCCTCTTTAACACAAGGAATGTTTGCAAAGCACTAA 1503 0.4338 MNEKANVSKELNAKHKKILEGLLKLPENKECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQHMGNEKANNYWEAELPPNYDRVGIENFIRAKYEEKRWVARNEKPKSPSSFREEKRPVERVGHNHAVVSENTFEDRKKIKPSNAIPATRICVPAPPRGPELVTPVGKPQHVDKAEPVSPPPQVETSKQTTDTTQNSPPKVDFSTDLFDMLSMDDPSEKGSGAAEAIADDNNWAGFQSATEALPAAKNDTTKSVDSRPQSTSGIEDLFKDSPSVTTSSTPENPQKDVKNDIMSLFEKGNVVSPFAMHQQQLAMLAQQQTLLMAAAAKSGGVDSKYLASLQQQSLLMAAAAKPASGDSKNPAGIQKPGSNIPVQSWPAAGYPVPGIMPMGNQEELQKLMQTMNLTAAHSAGSSVQYPQSSYYPMGQVAPVNGSSTTGGASKPESGSLVSSAYPISSTTSKTGSDYDFSSLTQGMFAKH 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium951g00002 500 CDD ArfGap 19 117 - -
Vium951g00002 500 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Vium951g00002 500 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vium951g00002 500 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vium951g00002 500 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vium951g00002 500 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Vium951g00002 500 MobiDBLite consensus disorder prediction 375 395 - -
Vium951g00002 500 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Vium951g00002 500 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 361 IPR044520 GO:0005096
Vium951g00002 500 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Vium951g00002 500 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Vium951g00002 500 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Vium951g00002 500 MobiDBLite consensus disorder prediction 172 228 - -
Vium951g00002 500 MobiDBLite consensus disorder prediction 266 309 - -
Vium951g00002 500 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium951g00002 Vium-Chr951 14636 21856 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium951g00002 16 123 C2H2 Transcription Factor Family AT4G05330 47.414 9.06e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium951g00002 K12486 - gmx:100807561 786.949