Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9519g00013 ATGAACTATACCGAACAGCAACTAACAGCAGCTGTTGTTTCTCATGGATTACGACCCGCACTTGCTACTGAGGACTTGGGTATACCATCCAGATTATTATCAATGATAAACAAATGCTGGGATGGAAATCCTAATAACAGACCCACTTTTGATGAAATAGTCAAGGAACTTGATTTGATTTTGGAGCACTGCAAATTAAAAAAGGAAGAAGATATTTATGTCAGGCCTGTTAACTTGCATGTTGATCAACCTGTGGACAACACTGAACACCTTCAGGCTTATCAAGAGAGTTTTAGTTGGTCCACACGCGGTGAACTTTTGACTGCCACTAGTGCAAATAATTCTGGTTTGATAACTGGGTGTGAGTTTTATGACAAGCCTTTTGTATACCACCCAATACTGTCTTGGGGATCTTATGCTACCTGTGGAAGAAGGGAAACTATGGAGGATACACATTTCATTCTGCCCCGTATTTGTGATGAGAAGGATGTCTATGCTTTTGGCATCTTTGATGGCCATAGGGGTGCAGCTGCTGCTGAGTTTTCTTCTAGAGCTGTACCAGCTGTTTTGCAGACTTCAGGTTTTATGGGCTGTCCTGCTAATGCACTAATGGAAGCATTCATTAGGACAGATGCTGCCTTCAGAAAAGAGCTTGATTCTTATCGCAAATCTAACAGATGTATCCAGAAGGATTGGCATCCTGGGTGTACAGCCATTACTGCTCTTATAGTCAGAAACAAGTTATTTGTTGCTAACGTTGGTGATTGCAGGGCAATCATATGTCGTACTGGTAATCCAATTTCCTTAAGTAAGGATCACGTCGCAAGCTGTCCTCAAGAGAGAGAACGTGTTATTCGTCAAGGTGGCCATGTACATTGGCAAGTTGACACTTGGAGGGTTGGTCTTCCTGCACTTCAGGTTACACGTTCTATTGGTGATGATGATCTGAAGCCTGCTGTCACTGCAGAACCTGAGATAACTGAAAATACCTTGTGCCCAGATGACGAGTTTCTGGTCATGGCTAGTGATGGCCTGTGGGATGTGATAAGCAGTACAGAGGTCATAAATATCATAAAAGATACTGTTAAAGAGCCTGGAATGTGTTCTAAGAGGTTGGCTACTGAAGCAGTAGAACGTGGCAGCAAAGATAACATAACAGTTATAGTTGTTTTCTTACGTCCTGTGTCCACTGCAGAGAGAATTTACTAG 1209 0.4243 MNYTEQQLTAAVVSHGLRPALATEDLGIPSRLLSMINKCWDGNPNNRPTFDEIVKELDLILEHCKLKKEEDIYVRPVNLHVDQPVDNTEHLQAYQESFSWSTRGELLTATSANNSGLITGCEFYDKPFVYHPILSWGSYATCGRRETMEDTHFILPRICDEKDVYAFGIFDGHRGAAAAEFSSRAVPAVLQTSGFMGCPANALMEAFIRTDAAFRKELDSYRKSNRCIQKDWHPGCTAITALIVRNKLFVANVGDCRAIICRTGNPISLSKDHVASCPQERERVIRQGGHVHWQVDTWRVGLPALQVTRSIGDDDLKPAVTAEPEITENTLCPDDEFLVMASDGLWDVISSTEVINIIKDTVKEPGMCSKRLATEAVERGSKDNITVIVVFLRPVSTAERIY 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9519g00013 402 Pfam Protein phosphatase 2C 140 385 IPR001932 -
Vium9519g00013 402 FunFam Leucine rich repeat protein phosphatase 2c domain containing protein 126 396 - -
Vium9519g00013 402 Gene3D Transferase(Phosphotransferase) domain 1 1 98 - -
Vium9519g00013 402 ProSiteProfiles PPM-type phosphatase domain profile. 135 392 IPR001932 -
Vium9519g00013 402 CDD PP2Cc 137 392 IPR001932 -
Vium9519g00013 402 Gene3D - 126 397 IPR036457 -
Vium9519g00013 402 PANTHER PROTEIN PHOSPHATASE 102 390 IPR015655 GO:0004722|GO:0006470
Vium9519g00013 402 SUPERFAMILY Protein kinase-like (PK-like) 23 85 IPR011009 -
Vium9519g00013 402 SMART PP2C_SIG_2 150 392 IPR001932 -
Vium9519g00013 402 SMART PP2C_4 125 390 IPR001932 -
Vium9519g00013 402 SUPERFAMILY PP2C-like 127 394 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9519g00013 Vium-Chr9519 57049 59662 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9519g00013 1 402 PP2C-type Phosphatase Gene Family AT2G40860 58.765 6.07e-168 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9519g00013 - - vum:124848565 825.469