Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9519g00012 ATGTCAAATAGTAGGAACACACATTGGTGTTATAGTTGCAGGAGGCCAGTTCGGCTGGGACGGCGAGATGTGGTTTGTCCTAGCTGCAACGAGGGATTTGTTCATGAACTTAATGATATGGTGCATGTTAATCCTTTTGATTTGTTTGGAATGGACAACAATGAAGAACGAGATCAAAGGGTTGGACTCATGGAAACTTTCTCTGCCTTTATGAGGCATCAAATGGCAGACAGGGGCAGAAGTCGTGACATCAGGGCACAAACAGATTCAAATCCTGAACACAGTGCAGGGTTTGCTCCTCTGCTGATCTTTGGTGGCCAAATACCTTTCAGATTGTCTGGTCATGGTGGCTTTGAAGCTCTCTTTAACGGGGCTCCTGGAATTGGTCTTACACGAGGTAACACAGGTGATTATTTTGTTGGTCCTGGACTTGAAGAACTTTTTGAACAGCTTTCAGCTAATACCAGGCAAGGTCCAGCACCAGCAACAAGATCCTCAATTGATGCTATGCCTACTATCAAGATCACACAGAGGCATCTTCGATCAGATTCACATTGTCCTGTGTGCAAAGATAAATTTGAGCTGGGGTCTGAAGCAAGACAAATGCCATGCAACCATTTATATCACTCAGATTGCATTGTTCCATGGTTGGTCCAGCATAACTCCTGCCCCGTTTGTCGCCAAGAACTGCCACCACAAGGATTGAGTAGTAATCGAGGCACAAATGGTAGAAGTAGAAGTGGAAGGGTAAGTAGTAGTGGTAGGGAGAGCCAGGGAAGGAGAAATCCGTTTTCCTTTTTGTGGCCTTTTCGTTCTTCTCATTCCAGCAGTAATGGTGAAGCAACCGGAAGCAGCACACAAGCACCAACCATCCCAGAGAATAGCCATCATTCAGGGTATTCTGGGTGGCCATTTGAATGA 921 0.456 MSNSRNTHWCYSCRRPVRLGRRDVVCPSCNEGFVHELNDMVHVNPFDLFGMDNNEERDQRVGLMETFSAFMRHQMADRGRSRDIRAQTDSNPEHSAGFAPLLIFGGQIPFRLSGHGGFEALFNGAPGIGLTRGNTGDYFVGPGLEELFEQLSANTRQGPAPATRSSIDAMPTIKITQRHLRSDSHCPVCKDKFELGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELPPQGLSSNRGTNGRSRSGRVSSSGRESQGRRNPFSFLWPFRSSHSSSNGEATGSSTQAPTIPENSHHSGYSGWPFE 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9519g00012 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 81 231 - -
Vium9519g00012 306 Pfam Ring finger domain 185 227 IPR001841 -
Vium9519g00012 306 MobiDBLite consensus disorder prediction 231 260 - -
Vium9519g00012 306 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Vium9519g00012 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
Vium9519g00012 306 SUPERFAMILY RING/U-box 166 233 - -
Vium9519g00012 306 MobiDBLite consensus disorder prediction 231 306 - -
Vium9519g00012 306 FunFam E3 ubiquitin-protein ligase RING1-like 149 233 - -
Vium9519g00012 306 MobiDBLite consensus disorder prediction 268 297 - -
Vium9519g00012 306 CDD RING-H2_RNF126-like 186 227 - -
Vium9519g00012 306 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Vium9519g00012 306 SMART ring_2 186 226 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9519g00012 Vium-Chr9519 48035 50299 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9519g00012 121 231 C3H Transcription Factor Family AT5G01980 43.478 1.84e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9519g00012 K11982 - gmx:100787523 572.392