Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9505g00009 ATGGCAATGCATGCATCTGGCTTGAAAACGGATGGAGCTTATGTGAGGCCAAATGGCATACTTACCTTGACAAATGATTCCTCAAAAATCTTTGGCCATGCATTCTATCCATCTCCTTTGCCATTCAAATCTAGCAAAAACAAATCCATTGTTTCAACCTTTAGCACTACCTTTGTGTTTTCCATAGTTCCTAAGTACCCAGATCTTGGAGGACACGGTTTTGCATTCGTCCTAATATCTACCAACGAACCAAAAGGGTGCCTCACAAATCAATATTTAGGCCTCCCAAATGAGACAAGTAATAAGGAACTCTCAACCCGGTTCCTAGCTGTAGAGTTTGATGGGGTACAGAACCTTGAACTTGAAGACATCGATGATAATCACGTGGGGATAGATATATCCAGCCTCATCTCTAACATATCTAAGTCAGCAGCATACTATTTAGAAAGAAATGGCCAAGAAGATCACAGCAAGAACATTTCCTTCAGTTTGAAGAGTGGAAAACCCATTCAAGCATGGGTTGATTACAATGAAGGGGAGATGATGATGCATGTCACAGTTTCTCCTTTTGGCATGCCAAAGCCATATTTTCCTTTGATATCATTTCGCATAGACCTATCCTTGGTGTTTGATGATTACATGTATGCAGGTTTTTCTGCTTCCAACGGTCTGCTGGTAGCTGAGTATAATATACATGGTTGGAGCTTCAAAGTAGGAGCAGCAGCACAAGCGCTAGAAAAATCATCCGTGCCACTTATTCGGTCAAATACTTCTATTAAGGTGGTGCACAAAAAACACTTTGCAGTAGGTATTACTCTAGCAAGTGCATCTCTTTTTATATTGACAATTATAGGAGCTCTTGCCCTACACAGATTAAGAAATAGGGAGGAGGTTTTAGAGGATTGGGAACTCGAATTTGCCACACATAAATTTAAATATTCTGAGCTCCATTCAGCTACAGGAAGGTTCGGGGACAGAAACCTTATTGGGTATGGAGGTTTTGGTAAAGTCTACAGAGGTGTAATCCCTAGCACAGGACTAGAAGTAGCCGTAAAGCGGGTTGCTCCTGATTCAAGGCAAGGAATCAGAGAATTTGTAGCGGAAATAACAAGCATGACACAGCTTAAGCATAGAAATTTGGTGCAATTACATGGGTGGTGCAGGAAGCAGGATGAACTCCTCATTGTGTATGATTATCTACCAAATGGAAGCCTAGACAAGCTTCTGTTTGAAAATGATCATCAAAAGAAGAAATTACTAACTTGGGAACAAAGATACAAAATCATTATTGGAGTTGCCCAAGGGCTGTTGTATCTCCATGAAGAAAGTGAGGTGCAGGTTGTTCACAGAGATGTAAAGCCAAGCAATGTCCTGATAGATGCAGATCTCCAACCAAAGCTTGGAGATTTCGGTCTTGCAAGGACTTACGAGCATGGAATCAATCCACAGACAACAAGCGTTGTGGGAACATTAGGCTACATGGCCCCTGAGCTCACCAAGACTGGGAAAGCAAGAACAAGCACAGATGTATATGGGTATGGAGTACTCATTTTGGAAGTAGCATGTGGAAGGAGGCCAATAGAGCCCCAAAAGAATCCCGAGGAACTGGTATTGGTAGATTGGGTTAGAGATCTACATCACCGAGGACAGGTCTGCAGAGCTATTGACCCCAGTTTATATGAGTATGACAAAGATGAAGCTCAGCTTGTGCTTAGTCTTGGATTGCTTTGCTCTCATCCCAATCCTCATTACAGACCTAATATGAGAAGGATTGTCCAGTTCCTTATGGGAGAAATTATCCTTTCTCCACTTCCTCCTGACATTCACAGTGAAGGTCCAAGAGAAATAGCAAAATGTCCCTGCAACTTTCCATATGATTCTCAACCTTCAAGTTCTATGGTGTCTTCGTCAAACTATTATAGTCTTACATGCTTTGATGAGGTGGTCTACCCTGCTGAACTCACTGGTATCACTTCATAG 1980 0.4192 MAMHASGLKTDGAYVRPNGILTLTNDSSKIFGHAFYPSPLPFKSSKNKSIVSTFSTTFVFSIVPKYPDLGGHGFAFVLISTNEPKGCLTNQYLGLPNETSNKELSTRFLAVEFDGVQNLELEDIDDNHVGIDISSLISNISKSAAYYLERNGQEDHSKNISFSLKSGKPIQAWVDYNEGEMMMHVTVSPFGMPKPYFPLISFRIDLSLVFDDYMYAGFSASNGLLVAEYNIHGWSFKVGAAAQALEKSSVPLIRSNTSIKVVHKKHFAVGITLASASLFILTIIGALALHRLRNREEVLEDWELEFATHKFKYSELHSATGRFGDRNLIGYGGFGKVYRGVIPSTGLEVAVKRVAPDSRQGIREFVAEITSMTQLKHRNLVQLHGWCRKQDELLIVYDYLPNGSLDKLLFENDHQKKKLLTWEQRYKIIIGVAQGLLYLHEESEVQVVHRDVKPSNVLIDADLQPKLGDFGLARTYEHGINPQTTSVVGTLGYMAPELTKTGKARTSTDVYGYGVLILEVACGRRPIEPQKNPEELVLVDWVRDLHHRGQVCRAIDPSLYEYDKDEAQLVLSLGLLCSHPNPHYRPNMRRIVQFLMGEIILSPLPPDIHSEGPREIAKCPCNFPYDSQPSSSMVSSSNYYSLTCFDEVVYPAELTGITS 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9505g00009 659 CDD STKc_IRAK 329 597 - -
Vium9505g00009 659 Gene3D Transferase(Phosphotransferase) domain 1 400 599 - -
Vium9505g00009 659 SUPERFAMILY Protein kinase-like (PK-like) 306 635 IPR011009 -
Vium9505g00009 659 PANTHER - 17 599 - -
Vium9505g00009 659 FunFam L-type lectin-domain containing receptor kinase S.4 400 607 - -
Vium9505g00009 659 SMART serkin_6 323 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9505g00009 659 ProSiteProfiles Protein kinase domain profile. 323 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9505g00009 659 SUPERFAMILY Concanavalin A-like lectins/glucanases 11 252 IPR013320 -
Vium9505g00009 659 ProSitePatterns Protein kinases ATP-binding region signature. 329 352 IPR017441 GO:0005524
Vium9505g00009 659 Pfam Protein kinase domain 327 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9505g00009 659 FunFam L-type lectin-domain containing receptor kinase S.4 4 244 - -
Vium9505g00009 659 Gene3D - 4 246 - -
Vium9505g00009 659 Gene3D Phosphorylase Kinase; domain 1 307 399 - -
Vium9505g00009 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Vium9505g00009 659 Pfam Legume lectin domain 11 249 IPR001220 GO:0030246
Vium9505g00009 659 CDD lectin_legume_LecRK_Arcelin_ConA 8 238 IPR001220 GO:0030246
Vium9505g00009 659 FunFam receptor-like protein kinase FERONIA 290 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9505g00009 Vium-Chr9505 47493 49556 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9505g00009 13 595 Receptor kinase-like Gene Family AT3G55550 48.211 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium9505g00009 Pkinase 1.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9505g00009 - - gmx:100801966 1065.45