Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9504g00002 ATGCACAGGTATGAACTGAATCCTGTATCTATAAAGGTTATGCTTCCAATGCAAACATCAAATGTTCCTTCTTCTTGTAAAGCAAAATTTCAGCGGGAGGTTAACTTGATATCCAAAATTAAACATAAAAATATAATAAAGTTTATTGGCGCTTCTGTGGAGCCAACAATGATGATAATTACAGAACTTTTGGAAGGTTGTTCGCTACATAAATACCTAGAGAGCATTTATCCAAATGCTCTTAGTTTAGAGCAATCCATAAGTTTTGCTTTGGATATTTCTCAAGCCATGGAGTATCTGCATGCAAATGGCATAATTCACCGCGATCTAAAACCTGGTAATTTGGTTCTTCCCAAAGACAAAATGCAAATATTACTTACAAACTTTGAGACAGCTAGAGAGGAGATATCTGGTGAGATGACTTCTGAGGCTGGTACATATCGATACATGGCTCCTGAGTTATTCAGCAAGGATCCACTTTCTAAAGGAGCCAAGAAATGCTATGACCATAAAGTAGACGTCCATAGCTTTGCTATGGTTCTATGGGCAATAGTTAAAAACCAGATTCCATTTAAAGGAAGGAGTGACTTGCTGGCAGCATATGCTACTGCAAAAAAGATGAGGCCTAGTTTGGAGGGTTTTCCAGAAGTTCTACTTCCATTGCTGCAGTCTTGTTGGGCAGAAGACCCAAAGCTACGACCTGAATTCTCAGAGATCTCGCAAATCCTTGAAAACCTTCTCCATAACTATCACTCAACAGGTATATCAGCTGAGGAAAAAGCATGTCCAACTACAAGTGTGCAGGAACTTTTCCCCAATTATGTTGAAGACAACTCAGAACATGAACATGAACATGAGACTCAGAATCTGAATACCAGTGTCTGCTTGGAGGGACAATCTGAGGTCATAACACAAAACTCTAGTCCAGTCTTAGCCCAAACCAAGCACAAAAGGACTCTTAAGAAGTGCAAGGGTTTATGGTTATGCTTTCGAAAATGCTTTCACATTGGTTAA 1014 0.3925 MHRYELNPVSIKVMLPMQTSNVPSSCKAKFQREVNLISKIKHKNIIKFIGASVEPTMMIITELLEGCSLHKYLESIYPNALSLEQSISFALDISQAMEYLHANGIIHRDLKPGNLVLPKDKMQILLTNFETAREEISGEMTSEAGTYRYMAPELFSKDPLSKGAKKCYDHKVDVHSFAMVLWAIVKNQIPFKGRSDLLAAYATAKKMRPSLEGFPEVLLPLLQSCWAEDPKLRPEFSEISQILENLLHNYHSTGISAEEKACPTTSVQELFPNYVEDNSEHEHEHETQNLNTSVCLEGQSEVITQNSSPVLAQTKHKRTLKKCKGLWLCFRKCFHIG 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9504g00002 337 SMART serkin_6 1 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9504g00002 337 ProSiteProfiles Protein kinase domain profile. 1 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9504g00002 337 ProSitePatterns Serine/Threonine protein kinases active-site signature. 105 117 IPR008271 GO:0004672|GO:0006468
Vium9504g00002 337 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 6 252 - -
Vium9504g00002 337 SUPERFAMILY Protein kinase-like (PK-like) 9 256 IPR011009 -
Vium9504g00002 337 Pfam Protein tyrosine and serine/threonine kinase 10 243 IPR001245 GO:0004672|GO:0006468
Vium9504g00002 337 Gene3D Transferase(Phosphotransferase) domain 1 3 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9504g00002 Vium-Chr9504 5321 11713 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9504g00002 8 252 MAP Kinase Kinase Kinase AT5G66710 55.918 7.20e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium9504g00002 PK_Tyr_Ser-Thr 8.9e-40 CL0016