Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9500g00014 ATGGGTATTAAGGGTTTAACTAAGCTTTTGTCGGACAATGCTCCAAAGTCCATGAAAGAGAACAAATTCGAGAGTTACTTCGGTCGCAAGATCGCTGTTGACGCCAGCATGAGCATTTACCAGTTCCTTATTGTCGTTGGAAGAAGCGGAACCGAAATGCTCACTAATGAAGCTGGTGAAGTTACCAGTCATTTGCAAGGGATGTTTTCGCGGACAATCAGACTTCTAGAAGCTGGGATGAAGCCAGTATATGTTTTTGATGGAAAGCCACCAGATTTGAAGAAACAAGAGCTGGCAAAACGTTATTCGAAGAGGGCAGATGCTACTGAGGATTTATCAGAAGCCTTAGAGAGTGCCAATAAAGAAGACATTGAGAAATTCAGTAAACGGACGGTGAAGGTGACAAAGCAGCATAATGATGACTGCAAAAGACTTTTAAGACTTATGGGCGTTCCCGTTGTTGAGGCACCCTCAGAAGCAGAGGCTCAATGTGCTGCACTTTGCAAAGCTGGAAAGGTTTATGCTGTGGCTTCTGAAGACATGGATTCCTTAACATTTGGTGCTCCTAAATTTCTTCGCCACTTAATGGATCCAAGCTCAAAAAAAATTCCAGTGATGGAATTTGAAATTGCAAAGATTTTAGAGGGGCTAAATCTGACCATGGACCAATTTATTGACGTATGCATTCTTTCTGGCTGTGATTATTGTGACAGTATTCGAGGAATTGGGGGACAGACAGCTTTGAAACTCATACGTGAACATGGCTCGATTGAAAATATGCTGGAAAAAATAAACAAAGAGAGGTACCAAATACCAGATAATTGGCCATATCAGGAGGCCCGACAGCTTTTTAAAGAACCGATGGTCTTAACTGATGAAAAGGAACTTGATATTAAGTGGACTGCTCCAGATGAAGAAGGGTTAATAACATTTCTGGTAAATGAGAATGGCTTCAATAGTGATAGAGTGACTAAGGCAATAGAAAAGATTAAAGCAGCAAAGAACAAATCATCACAAGGCCGATTGGAATCATTTTTTAAACCCACAGCAAATCCATCAGTACCGATTAAACGCAAGGAAACACCATCGAATAATGCTAAAGAAACTAACAAAAAGGCCAAGGGTGCTGGTGGTAGGAAGAAGAAATAA 1149 0.4091 MGIKGLTKLLSDNAPKSMKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGMKPVYVFDGKPPDLKKQELAKRYSKRADATEDLSEALESANKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFEIAKILEGLNLTMDQFIDVCILSGCDYCDSIRGIGGQTALKLIREHGSIENMLEKINKERYQIPDNWPYQEARQLFKEPMVLTDEKELDIKWTAPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKETPSNNAKETNKKAKGAGGRKKK 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9500g00014 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Vium9500g00014 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Vium9500g00014 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Vium9500g00014 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Vium9500g00014 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Vium9500g00014 382 SMART 53exo3 29 306 IPR002421 GO:0003677
Vium9500g00014 382 FunFam Flap endonuclease 1 219 286 - -
Vium9500g00014 382 Gene3D - 10 221 - -
Vium9500g00014 382 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Vium9500g00014 382 CDD PIN_FEN1 4 332 - -
Vium9500g00014 382 Gene3D - 222 286 - -
Vium9500g00014 382 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 372 IPR006084 -
Vium9500g00014 382 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518
Vium9500g00014 382 SMART xpgn3 1 108 IPR006085 GO:0004518
Vium9500g00014 382 CDD H3TH_FEN1-Euk 222 290 - -
Vium9500g00014 382 SMART xpgineu 147 219 IPR006086 GO:0004518
Vium9500g00014 382 FunFam Flap endonuclease 1 10 222 - -
Vium9500g00014 382 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Vium9500g00014 382 MobiDBLite consensus disorder prediction 335 382 - -
Vium9500g00014 382 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 354 IPR036279 -
Vium9500g00014 382 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788
Vium9500g00014 382 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Vium9500g00014 382 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9500g00014 Vium-Chr9500 35360 40421 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9500g00014 1 361 Core DNA Replication Machinery Family AT5G26680 86.981 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9500g00014 K04799 - gmx:100792878 694.115