Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium9500g00003 | ATGTCTTCCTCGAGACCCAGCCAATCATCCAGCAATTCAGGGAGATCAAGACATAGTGCTAGGGTTCTTGCCCAGACAACTGTAGATGCAAAGCTTCATGCAACTTTTGAGGAGTCTGGTAGTTCCTTTGATTACTCCAGTTCGGTGCGAGTCTCTGGTACAGCTGATGGAGTCAATCAACCAAGGTCTGATAAAGTTACGACAGCTTACCTCCATAACATACAGAGAGGAAAGATGATTCAGCCTTTTGGATGCTTGTTGGCTTTAGATGAGAAAACATGCAAGGTCATTGCATACAGTGAGAACGCTCCTGAAATGCTGACCATGGTTAGTCATGCTGTCCCCAGTGTTGGTGACCACCCTGCCCTTGGCATTGGCACTGACATAAAAACTTTGTTCACAGCACCTAGTGCTTCTGCATTGCAAAAGGCTCTGGGATTTGGGGAGGTTTCACTTCTTAACCCGATCCTTGTTCATTGCAAGACCTCTGGGAAGCCCTTTTATGCGATTATTCATCGTGTTACTGGCAGTTTGATCATTGACTTTGAGCCAGTCAAGCCTTATGAAGTTCCCATGACTGCAGCTGGTGCCTTGCAGTCTTACAAGCTTGCTGCCAAAGCAATTACCCGGTTGCAATCTTTGCCTAGTGGAAGCATGGACAGATTATGTGATACAATGGTTCAAGAAGTTTTTGAGCTCACAGGCTATGACAGGGTGATGGCTTATAAATTTCACGATGATGACCATGGGGAGGTGATTGCTGAGATAACAAAGCCAGGCCTTGAGCCATATTTGGGTTTGCATTATCCAGCCACAGATATTCCCCAGGCTTCACGCTTTTTATTTATGAAGAACAAGGTCCGTATGATAGTTGATTGTCATGCAAAACACGTTAAAGTTCTGCAAGATGAAAAACTCCCATTTGATTTGACTTTGTGTGGTTCCACCTTGAGGGCTCCTCATAGTTGTCATGCTCAATACATGGCAAACATGGATTCAATTGCTTCCCTGGTCATGGCAGTTGTAGTCAATGACAACGAAGAAGATGGTGACACTGATGCTGTTCAGCCACAAAAAAGGAAGAGACTTTGGGGTTTGGTAGTTTGCCATAACACTACTCCCAGGTTCGTTCCCTTTCCTCTTAGGTATGCTTGTGAATTTCTGGCCCAAGTATTTGCCATCCATGTGAACAAAGAAATAGAGTTAGAATATCAGATTATTGAGAAGAATATCCTCCGCACACAGACACTCTTGTGTGATATGCTGATGCGAGATGCACCCCTTGGAATTGTATCACAGAGCCCTAATATAATGGATCTAGTGAAATGTGATGGAGCAGCACTCTTATATAAGAACAAGTTATGGAGATTAGGAGTGACACCAAGTGAATCCCAGATAAGAGAGATTTCTCTGTGGCTGTCCGAGTACCATATGGATTCCACAGGCTTGAGTACGGATAGCTTGTCTGATGCAGGCTTCCCATCGGCTCTTTCTATGGGTGATGTTGTGTGTGGAATGGCAGCTGTCAGAATTACTTCGAAAGACGTGGTATTTTGGTTTCGGTCACACACTGCTGCAGAAATCCGATGGGGTGGTGCAAAGCATGAGGCTGGAGAAAAAGATGACGGTAGGAGGATGCATCCGAGATCGTCATTCAAGGCTTTCCTTCAAGTCGTGAAGGCAAGGAGCTTGCCGTGGAAGGACTATGAAATGGATGCCATTCATTCCTTACAGTTAATACTGAGAAATGCATTCAGAGATTCTGAGGGTACAGATTTACAGACAACTGCAATTAATACAAAACTAAGTGATCTGAAGATCGAAGGGATGCAGGAACTGGAAGCAGTTACAAGCGAGATGGTTAGGTTGATTGAAACAGCAACAGTGCCTATTTTGGCAGTTGATGTCGATGGGCTTGTAAACGGGTGGAACATAAAAGTTGCTGAGTTGACAGGTCTTCCAGTTGGTGAAGCTATTGGAAAACATTTACTCACACTTGTCGAGGATTCTTCAACTGATAGAGTCAAGAAGATGCTTGACTTGGCACTACAAGGTGAAGAAGAGAAGAATGTTCAATTTGAGATCAAAACGTTCGGGTCCAAGATGGACTCTGGTCCTATTAGTCTAGTAGTAAACGCTTGTGCAAGCAGGGATCTTCGAGACAATGTTGTTGGTGTTTGCTTTGTGGCTCATGATATAACTGCTCAGAAGAATGTAATGGACAAATTCACACGTATTGAAGGTGATTACAAGGCAATTGTACAGAACCCCAATCCATTAATCCCCCCTATATTTGGCACAGATGAATTTGGCTGGTGTTGTGAGTGGAATCCAGCTATGTCAAAGTTAACTGGATGGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTGGGAGAGGTTTTTGGCACCCAGATGTCTTGTTGTCGACTAAAGAACCAAGAAGCTTTTGTTAATTTTGGCATTGTACTTAATAAAGCCATGACTGGCTCAGAAACAGAGAAAGTTGCTTTTGGTTTCTTGGCTCGGAATGGCAAGTATGTAGAGTGCCTACTTTCTGTGAGTAAGAAGTTGGACGTAGAGGGCCTAGTTACTGGGGTCTTCTGCTTCTTACAGCTAGCTAGCCCGGAACTCCAGCAAGCATTGCATATTCAGCGTCTATCTGAAAAAACTGCCTTGAAGAGATTGAATGCATTAACTTACATGAAAAGGCAGATCAGGAATCCTTTATGTGGGATTATATTTTCACGGAAAATGTTGGAGGGTACTGAATTGGGAACAGAACAGAAACAATTTCTGCATACTAGTGCTCAGTGCCAGCGGCAACTTAGCAAAATTCTTGATGACTCAGATCTTGACAGCATCTTAGACGGTTACTTGGATCTTGAGATGGCTGAATTTACTCTGCATGAAGTAATGATTGCCTCCATTAGCCAAGTCATGACAAAAAGTAATGGAAAGAGTATCCGAATAGTCAATGATGTTGCAGAACAAATCGTAATGGAAACTTTATACGGTGATAGTCTAAGGCTTCAGCAGGTCTTGGCTGACTTCTTACTTATTTCCATCAATTTCACACCAAATGGAGGCCAGGTTGCTGTAGCAGGCTCTCTAACCAAAGAGCAGTTAGGGAAGTCGGTCCATCTTGTTAAGTTAGAGCTCAGCATAACACATGGTGGGAGTGGGGTGCCAGAAGCATTACTGAACCAGATGTTTGGAAATAATGGACTAGAATCGGAGGAGGGTATGAGCCTACTGATCAGCAGAAAGCTGTTGAAGCTCATGAATGGAGATGTTCGCTATCTAAGGGAAGCAGGCAAATCAGCTTTTATCCTCTCTGCTGAACTTGCTGCAGCCCATAATTTGAAAGCTTAA | 3372 | 0.4359 | MSSSRPSQSSSNSGRSRHSARVLAQTTVDAKLHATFEESGSSFDYSSSVRVSGTADGVNQPRSDKVTTAYLHNIQRGKMIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIKTLFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMDRLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVIAEITKPGLEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHAQYMANMDSIASLVMAVVVNDNEEDGDTDAVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQIIEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKLWRLGVTPSESQIREISLWLSEYHMDSTGLSTDSLSDAGFPSALSMGDVVCGMAAVRITSKDVVFWFRSHTAAEIRWGGAKHEAGEKDDGRRMHPRSSFKAFLQVVKARSLPWKDYEMDAIHSLQLILRNAFRDSEGTDLQTTAINTKLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNIKVAELTGLPVGEAIGKHLLTLVEDSSTDRVKKMLDLALQGEEEKNVQFEIKTFGSKMDSGPISLVVNACASRDLRDNVVGVCFVAHDITAQKNVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNPAMSKLTGWKREEVMDKMLLGEVFGTQMSCCRLKNQEAFVNFGIVLNKAMTGSETEKVAFGFLARNGKYVECLLSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQRLSEKTALKRLNALTYMKRQIRNPLCGIIFSRKMLEGTELGTEQKQFLHTSAQCQRQLSKILDDSDLDSILDGYLDLEMAEFTLHEVMIASISQVMTKSNGKSIRIVNDVAEQIVMETLYGDSLRLQQVLADFLLISINFTPNGGQVAVAGSLTKEQLGKSVHLVKLELSITHGGSGVPEALLNQMFGNNGLESEEGMSLLISRKLLKLMNGDVRYLREAGKSAFILSAELAAAHNLKA | 1123 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium9500g00003 | 1123 | ProSiteProfiles | PAS repeat profile. | 616 | 686 | IPR000014 | - | |
| Vium9500g00003 | 1123 | Pfam | PAS fold | 749 | 871 | IPR013767 | GO:0006355 | |
| Vium9500g00003 | 1123 | Pfam | PAS fold | 619 | 733 | IPR013767 | GO:0006355 | |
| Vium9500g00003 | 1123 | ProSiteProfiles | Histidine kinase domain profile. | 900 | 1119 | IPR005467 | - | |
| Vium9500g00003 | 1123 | SMART | HisKA_10 | 893 | 958 | IPR003661 | GO:0000155|GO:0007165 | |
| Vium9500g00003 | 1123 | Gene3D | - | 405 | 578 | IPR043150 | - | |
| Vium9500g00003 | 1123 | FunFam | Phytochrome | 612 | 743 | - | - | |
| Vium9500g00003 | 1123 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 74 | 186 | IPR035965 | - | |
| Vium9500g00003 | 1123 | Gene3D | - | 933 | 1110 | IPR036890 | - | |
| Vium9500g00003 | 1123 | CDD | PAS | 627 | 733 | IPR000014 | - |
Showing 1 to 10 of 47 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium9500g00003 | K12120 | - | gmx:100790763 | 2060.42 |
Showing 1 to 1 of 1 entries