Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9495g00001 ATGAAGTACTTGCAAGATTTAGTACCTGGTTGCAACAAAATTACGGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAGTCTCTTCAACGACAGGTTGAGTTTCTGTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACCTCAGTATTGATGATCTGTTTGAAAAAGAGGTGTTTCCTTGTGCTGCGAATTTTCCAAACATTGGAATGTCATCGGATTTGACGAACTCTGGCTATGTTCAATTCAATTCACCACAAGAAATGGTTTCGTATGGAGGATTAGACACGGTGATTAACCCTCCCTACATGGGCCTAAAAAGAACTATAAGTGCCCATTTATCATCAGTGCCTGAAACATATCTTCACTCATCCTCTTTCACACAATTGCTTCCCTCCTCAGCATGGGAAGGTGATTTCCAAAACGTTTTCAATTTGGATTTTGATCAAGTGCGAGCCACATCTTTCCCTTCACATTTGTCTTCAGGACTGGTTGAAGCTGGCAATCATCTAAAGATGGAGATGTAG 534 0.4082 MKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDLSIDDLFEKEVFPCAANFPNIGMSSDLTNSGYVQFNSPQEMVSYGGLDTVINPPYMGLKRTISAHLSSVPETYLHSSSFTQLLPSSAWEGDFQNVFNLDFDQVRATSFPSHLSSGLVEAGNHLKMEM 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9495g00001 177 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 31 IPR011598 GO:0046983
Vium9495g00001 177 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 49 IPR036638 GO:0046983
Vium9495g00001 177 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 86 IPR024097 GO:0006355
Vium9495g00001 177 Gene3D - 1 52 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9495g00001 Vium-Chr9495 1468 3433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9495g00001 1 146 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 48.630 2.00e-33 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9495g00001 - - vum:124848528 357.836