Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9480g00002 ATGTCCTCCGAAGACATCACCCTCGTCCCCGACCAGAGGATCGAGAACGGTCTCAGCTCCCCTCTTGTCTTCCAAGACGACCCTCTCCGCTTCAATTGCCCCACGCCGCAGCGTCGGGTCGGAGACCCGGGTCCTAAAACCCGTGAACTCGGCGCCTTCATCGACGAGAAGATGTTCATCGACCGCGACCGCTTCTTCGCCGCCCAGAACCCCGACTTCCGCCGCTACGCCGACTGCTCCTCCCGCCAAGACCCCCGCAATTGGACCGTCAACGGCACCGCCGCCACTCCCAGCGAGGACGACGAATCCGACGAGGACGACGAAGATGACGAGGATGAGGACGACGACGAAGGCGATACGGAAGTTGAAGGACTCGTCGGTGGTGGAAGCAAAAGGGAAATTATCGCTAACAACAACGGTGGCGGTGGTAATTTGCCTTCTGTTGCAAACGGGAAAGCTCACGCTTTTGTTTCTGGGAGAGAGCTGTTGGGGAAGGATGGTGGAGAGATTGGGCAGTTGGTGCTTAGCAATGTGAATGGTGGTGGTGATGAAGATCATCGGCAAGAGGGGTTAGGTAAGTCTCAGAATTCTGTTACCGTTGCTGACACTGACTGTGAGGAGTACTATTCGCACTATCTTCAAGGTGCCGATGGGGCTTCTGGTCACAAAGTTATGGTCGATGATGGTGGTTGTGGGTTTAGTGGGAGAAAGGATGCAATGTATTCTACCGAGTCAGGGGAATCACTCAGGAATATTCTTTCAGATCCTGTTACTGGAGCTCTTATGGATGACGCAATGATATTACCGTGTGGACATTCATTTAGCGGAAGTGGAATACAGCATGTTATTAGAATGAAAGCTTGCTGCACCTGTTCTCAACCCACAACCGAGGAATCAATATCTCCTAACCTATCACTTCGAGCTGCTGTGCAGGCATATCGTCGGGAAGAGGAGTCTCAATTCTACCGGTCACCTAAAAGAAGAAGAGAGAGATTTGATCAGGGTGGATTTGGAGACTCATCTGTTATGGAGCCATCAAGGAGTAGAGGTGTTCAGTTTCCGTATGCTGTTATGGACCGGGTTGTCATAAAGGGAAACAAAAGGACACCACAACGCTTTGTTGGGCGTGAAGCGATTGTAACAACGCAATGCCTGAATGGATGGTATGTAGTGAAGACATTGGACAATGCAGAGAGTGTAAAGTTTCAGTATCGATCACTCGCTAAAGTTTTGGATGATCCTTCAAAGCCTTCCTCCAGCAAGATGTCACCTAATTGGCTTTAG 1284 0.5093 MSSEDITLVPDQRIENGLSSPLVFQDDPLRFNCPTPQRRVGDPGPKTRELGAFIDEKMFIDRDRFFAAQNPDFRRYADCSSRQDPRNWTVNGTAATPSEDDESDEDDEDDEDEDDDEGDTEVEGLVGGGSKREIIANNNGGGGNLPSVANGKAHAFVSGRELLGKDGGEIGQLVLSNVNGGGDEDHRQEGLGKSQNSVTVADTDCEEYYSHYLQGADGASGHKVMVDDGGCGFSGRKDAMYSTESGESLRNILSDPVTGALMDDAMILPCGHSFSGSGIQHVIRMKACCTCSQPTTEESISPNLSLRAAVQAYRREEESQFYRSPKRRRERFDQGGFGDSSVMEPSRSRGVQFPYAVMDRVVIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKFQYRSLAKVLDDPSKPSSSKMSPNWL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9480g00002 427 ProSiteProfiles U-box domain profile. 248 320 IPR003613 GO:0004842|GO:0016567
Vium9480g00002 427 MobiDBLite consensus disorder prediction 98 122 - -
Vium9480g00002 427 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 4 422 - -
Vium9480g00002 427 MobiDBLite consensus disorder prediction 77 134 - -
Vium9480g00002 427 SUPERFAMILY RING/U-box 248 320 - -
Vium9480g00002 427 MobiDBLite consensus disorder prediction 82 97 - -
Vium9480g00002 427 MobiDBLite consensus disorder prediction 320 345 - -
Vium9480g00002 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 328 IPR013083 -
Vium9480g00002 427 MobiDBLite consensus disorder prediction 320 335 - -
Vium9480g00002 427 Pfam U-box domain 253 318 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9480g00002 Vium-Chr9480 1 4775 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9480g00002 19 427 Plant U-box Gene Family AT5G05230 44.000 3.94e-86 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9480g00002 - - gmx:100786717 691.034