Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium947g00021 ATGGGTTCTGATATTTGCGTCGTTAATGGTTCGTGCACTCATGAATGGAGAAAGGGGTGGCTTCTGCGATCTGGTGGATTCGCCCAACTGTGCTGCAAGTGCGGATTTATGGAGGAGTGGAAGGGTGACATCCATGAGCCATTATCCGCATACGAGAATTCAGTTTTCTGCAGCAAATTTCATCACCAACAAACTGGTTGGAGGGAGTGTAACTTTTGCAACAAGCCTATCCACTGTGGTTGCATGGTATCTAGATCTTTGTTCGAGCATCTTGACTTTGGTGGTATAGGATGTGTTAGCTGTGTAAATACTAGCCAACTTAGTACGATGAGGAATATTGAAAATCCAAATGGGCCGGTTTCATTGAAAAAAAATAATTCAAGTGATCGGCCTTCTCGTTCTGAGGGAAGACTGTTTGCACGAGGTGTTGATGAAGGAAAGCTTATGCAATTCTGCAAAATTATTGAGGCCAGTGAATCCAGCCGATGGAATAATGCTCAAAAAGATGGCACCATTTCACGTCATGGGCACAACAACCAAGAAGCCAAATGTTCATTCGGGGAAGGAGACATTGGTTTTTCAAATGTGGTGAAGCCATCTGTTCAGTCATTAACATTTGCTACATTAGAAAATAATAGGTCACCATGGGAGATTAAAAACATCCACGAAGCAAATGTGCAACCATCATTGAGTATGTACCTAGGAAATGCATCTGGGAAAAACTCTGTTCTGCCTTCTGCTGGAGAGGCTGTGGAAGGAAGACTTGAGGGAAAAACATCTCCACCTTTTCATCAAGGGCAAAGATCTCGCCCTATATTTCCAAAACCGGTGAAGAGTGGGCTTACCATGAATGTGGAAATAGATAAAGGTACAATTTCTCAATCTCGAGTTGCTCGGCCACCTGCAGATGGCAGAGGAAAGAATCAGTTACTTCCTCGATATTGGCCGAGGATTACCGATCAAGAGCTGGAGCGACTATCTGGAGATTTGAAATCCACCGTTGTGCCATTATTTGAGAAGGTATTAAGTGCCAGTGATGCTGGCCGAATTGGCCGTCTTGTTCTCCCAAAAGCTTGCGCTGAGGCATATTTCCCTTCTATTTCACAATCTGAGGGTGTTCCTTTGCGAATGCAAGATGTGAAGGGGAACGAGTGGACATTTCAGTTCAGATTTTGGCCAAATAACAACAGTAGAATGTATGTATTGGAGGGTGTGACCCCATGCATACAGGCCATGCAATTACGCGCTGGTGATACTGTAACATTTAGTCGGATAGACCCGGGAGGCAAACTTGTAATGGGTTTCAGAAGGGCATCGAATTCTGCAGATACACAGGATACCTCCACATCTGCACAATCTAATTCAGCAAAGGGAGCTACCTCTGCTGGAACTGAGAATCTGCCATCAGGAAGTAATAATGCCAATCTTCTCCTTTCAATGAAGGGGAATGTGGAAACTAACATTAATGGACAAAGAGAACATCCACTTTTGGCTACCGGAACTTCTGGGTTGCTTATAACTGAAACTAATGGGATGATGACAAACAATACTTCACTACAGAGAAAAGTTTCGGTTTCAGAGAAGAAGAAAACTCGTAATATTGGGCCTAAAAGTAAGAGGCTGCTTATTGATAATGAAGATGCTAGGGAGTTAAAACTTACATGGGAAGAAGCACAGGATTTACTTCGTCCTCCTCCTAGTGTCAAGCCAAGCATTGTCACAATTGAGGACCAAGTATTTGAAGAATATGATGAACCCCCAGTTTTTGGAAAGAGAACTATATTCAGTACCTGTTCTTCTGGGGTGAAGGAACAATGGGCTCAATGTGATGATTGCTCTAAATGGCGAAAGCTTCCAGTTGATGCTCTTCTTCCTGCCAATTGGACATGTTTTGACAATGCTTGGGATTCAAGAAGATGTTCATGCACAGTACCTGAAGAGCTAAGTTCAGGGGAATTAGAAAGTCTTTTGAAAACCGACAAAGATTTTAAGAAGCGACGAAGTGATGAAAAGAGCATGTCAATCCAAGAACACATGGCATCTGGCTTGGAAGCTCTTGCCAGTGCAGCAGCCCTGGGAGACAATCTTGTTGACACGGCCGAATCATCGGCTGGAGCCACCACCAAGCATCCCAGACACCGTCCCGGCTGCTCTTGCATTGTGTGCATCCAGCCACCAAGTGGCAAGGGGCGACACAAGCCGACATGCGCATGCAACGTGTGCCTGACCGTGAAGCGACGGTTCAAAACCCTCATGCTGCGAAAGAAGAAACGGCAATCCGAACGCGAAGCAGAAGCTGCCCAGAAAGATCAAGTTCTCCCCAAAGAGGAGTCAGATACCAATGAAACATCAAGAGATGATGCTACTCAGTTGGAGAAAGAGGTAGTAGGACTAAGCAGAAGTCAAGCTGAAGTGGAACATGAATATATGAACCAAAATGATCCAAGAAGCTACAACAATGAATTGCAGAATGGTGAGAATTCTTCTTTGCACACTCCTCAATCCAATGGAGAAGGTCAGAGACACTTCTCTGATCTAAGAAGCTTTGCATCCATTATGTGGAACCAAGAAAGAAGAGATGAGGAAGACAGTGAACCCAATCAAAACCAAAACCAAAACAATCTTTGTTAA 2631 0.4413 MGSDICVVNGSCTHEWRKGWLLRSGGFAQLCCKCGFMEEWKGDIHEPLSAYENSVFCSKFHHQQTGWRECNFCNKPIHCGCMVSRSLFEHLDFGGIGCVSCVNTSQLSTMRNIENPNGPVSLKKNNSSDRPSRSEGRLFARGVDEGKLMQFCKIIEASESSRWNNAQKDGTISRHGHNNQEAKCSFGEGDIGFSNVVKPSVQSLTFATLENNRSPWEIKNIHEANVQPSLSMYLGNASGKNSVLPSAGEAVEGRLEGKTSPPFHQGQRSRPIFPKPVKSGLTMNVEIDKGTISQSRVARPPADGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPSISQSEGVPLRMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMQLRAGDTVTFSRIDPGGKLVMGFRRASNSADTQDTSTSAQSNSAKGATSAGTENLPSGSNNANLLLSMKGNVETNINGQREHPLLATGTSGLLITETNGMMTNNTSLQRKVSVSEKKKTRNIGPKSKRLLIDNEDARELKLTWEEAQDLLRPPPSVKPSIVTIEDQVFEEYDEPPVFGKRTIFSTCSSGVKEQWAQCDDCSKWRKLPVDALLPANWTCFDNAWDSRRCSCTVPEELSSGELESLLKTDKDFKKRRSDEKSMSIQEHMASGLEALASAAALGDNLVDTAESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCACNVCLTVKRRFKTLMLRKKKRQSEREAEAAQKDQVLPKEESDTNETSRDDATQLEKEVVGLSRSQAEVEHEYMNQNDPRSYNNELQNGENSSLHTPQSNGEGQRHFSDLRSFASIMWNQERRDEEDSEPNQNQNQNNLC 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium947g00021 876 MobiDBLite consensus disorder prediction 437 474 - -
Vium947g00021 876 SMART B3_2 338 439 IPR003340 GO:0003677
Vium947g00021 876 FunFam B3 domain-containing transcription repressor VAL1 316 443 - -
Vium947g00021 876 MobiDBLite consensus disorder prediction 756 793 - -
Vium947g00021 876 MobiDBLite consensus disorder prediction 112 127 - -
Vium947g00021 876 Gene3D - 603 658 - -
Vium947g00021 876 ProSiteProfiles B3 DNA-binding domain profile. 338 439 IPR003340 GO:0003677
Vium947g00021 876 ProSiteProfiles Zinc finger CW-type profile. 600 650 IPR011124 GO:0008270
Vium947g00021 876 MobiDBLite consensus disorder prediction 805 842 - -
Vium947g00021 876 Pfam B3 DNA binding domain 338 438 IPR003340 GO:0003677
Vium947g00021 876 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 824 - -
Vium947g00021 876 SUPERFAMILY DNA-binding pseudobarrel domain 336 437 IPR015300 -
Vium947g00021 876 CDD B3_DNA 336 437 IPR003340 GO:0003677
Vium947g00021 876 MobiDBLite consensus disorder prediction 254 277 - -
Vium947g00021 876 MobiDBLite consensus disorder prediction 112 138 - -
Vium947g00021 876 MobiDBLite consensus disorder prediction 753 876 - -
Vium947g00021 876 MobiDBLite consensus disorder prediction 438 474 - -
Vium947g00021 876 Pfam CW-type Zinc Finger 605 647 IPR011124 GO:0008270
Vium947g00021 876 Gene3D - 316 443 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium947g00021 Vium-Chr947 217753 225188 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium947g00021 1 795 B3 DNA Binding Superfamily AT2G30470 48.020 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium947g00021 B3 1.3e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium947g00021 K09287 - gmx:100789848 1432.54