Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium947g00020 ATGGGTTCTGATATTTGCGTCGTTAATGGTTCGTGCACTCATGAATGGAGAAAGGGGTGGCTTCTGCGATCTGGTGGATTCGCCCAACTGTGCTGCAAGTGCGGATTTATGGAGGAGTGGAAGGGTGACATCCATGAGCCATTATCCGCATACGAGAATTCAGTTTTCTGCAGCAAATTTCATCACCAACAAACTGGTTGGAGGGAGTGTAACTTTTGCAACAAGATGAGGAATATTGAAAATCCAAATGGGCCGGTTTCATTGAAAAAAAATAATTCAAGTGATCGGCCTTCTCGTTCTGAGGGAAGACTGTTTGCACGAGGTGTTGATGAAGGAAAGCTTATGCAATTCTGCAAAATTATTGAGGCCAGTGAATCCAGCCGATGGAATAATGCTCAAAAAGATGGCACCATTTCACGTCATGGGCACAACAACCAAGAAGCCAAATGTTCATTCGGGGAAGGAGACATTGGTTTTTCAAATGTGGTGAAGCCATCTGTTCAGTCATTAACATTTGCTACATTAGAAAATAATAGGTCACCATGGGAGATTAAAAACATCCACGAAGCAAATGTGCAACCATCATTGAGTATGTACCTAGGAAATGCATCTGGGAAAAACTCTGTTCTGCCTTCTGCTGGAGAGGCTGTGGAAGGAAGACTTGAGGGAAAAACATCTCCACCTTTTCATCAAGGGCAAAGATCTCGCCCTATATTTCCAAAACCGGTGAAGAGTGGGCTTACCATGAATGTGGAAATAGATAAAGGTACAATTTCTCAATCTCGAGTTGCTCGGCCACCTGCAGATGGCAGAGGAAAGAATCAGTTACTTCCTCGATATTGGCCGAGGATTACCGATCAAGAGCTGGAGCGACTATCTGGAGATTTGAAATCCACCGTTGTGCCATTATTTGAGAAGGTATTAAGTGCCAGTGATGCTGGCCGAATTGGCCGTCTTGTTCTCCCAAAAGCTTGCGCTGAGGCATATTTCCCTTCTATTTCACAATCTGAGGGTGTTCCTTTGCGAATGCAAGATGTGAAGGGGAACGAGTGGACATTTCAGTTCAGATTTTGGCCAAATAACAACAGTAGAATGTATGTATTGGAGGGTGTGACCCCATGCATACAGGCCATGCAATTACGCGCTGGTGATACTGTAACATTTAGTCGGATAGACCCGGGAGGCAAACTTGTAATGGGTTTCAGAAGGGCATCGAATTCTGCAGATACACAGGATACCTCCACATCTGCACAATCTAATTCAGCAAAGGGAGCTACCTCTGCTGGAACTGAGAATCTGCCATCAGGAAGTAATAATGCCAATCTTCTCCTTTCAATGAAGGGGAATGTGGAAACTAACATTAATGGACAAAGAGAACATCCACTTTTGGCTACCGGAACTTCTGGGTTGCTTATAACTGAAACTAATGGGATGATGACAAACAATACTTCACTACAGAGAAAAGTTTCGGTTTCAGAGAAGAAGAAAACTCGTAATATTGGGCCTAAAAGTAAGAGGCTGCTTATTGATAATGAAGATGCTAGGGAGTTAAAACTTACATGGGAAGAAGCACAGGATTTACTTCGTCCTCCTCCTAGTGTCAAGCCAAGCATTGTCACAATTGAGGACCAAGTATTTGAAGAATATGATGAACCCCCAGTTTTTGGAAAGAGAACTATATTCAGTACCTGTTCTTCTGGGGTGAAGGAACAATGGGCTCAATGTGATGATTGCTCTAAATGGCGAAAGCTTCCAGTTGATGCTCTTCTTCCTGCCAATTGGACATGTTTTGACAATGCTTGGGATTCAAGAAGATGTTCATGCACAGTACCTGAAGAGCTAAGTTCAGGGGAATTAGAAAGTCTTTTGAAAACCGACAAAGATTTTAAGAAGCGACGAAGTGATGAAAAGAGCATGTCAATCCAAGAACACATGGCATCTGGCTTGGAAGCTCTTGCCAGTGCAGCAGCCCTGGGAGACAATCTTGTTGACACGGCCGAATCATCGGCTGGAGCCACCACCAAGCATCCCAGACACCGTCCCGGCTGCTCTTGCATTGTGTGCATCCAGCCACCAAGTGGCAAGGGGCGACACAAGCCGACATGCGCATGCAACGTGTGCCTGACCGTGAAGCGACGGTTCAAAACCCTCATGCTGCGAAAGAAGAAACGGCAATCCGAACGCGAAGCAGAAGCTGCCCAGAAAGATCAAGTTCTCCCCAAAGAGGAGTCAGATACCAATGAAACATCAAGAGATGATGCTACTCAGTTGGAGAAAGAGGTAGTAGGACTAAGCAGAAGTCAAGCTGAAGTGGGTGAGTCCAGTGCTGCTGGACAAATTGATCTGAATTCTGATCCCAACCGTGAAGACATGGTAGTTGATTTATCAGCAATTTTCTTTTGTGAATCAGACCCTACTACAGAACATGAATATATGAACCAAAATGATCCAAGAAGCTACAACAATGAATTGCAGAATGGTGAGAATTCTTCTTTGCACACTCCTCAATCCAATGGAGAAGGTCAGAGACACTTCTCTGATCTAAGAAGCTTTGCATCCATTATGTGGAACCAAGAAAGAAGAGATGAGGAAGACAGTGAACCCAATCAAAACCAAAACCAAAACAATCTTTGTTAA 2637 0.441 MGSDICVVNGSCTHEWRKGWLLRSGGFAQLCCKCGFMEEWKGDIHEPLSAYENSVFCSKFHHQQTGWRECNFCNKMRNIENPNGPVSLKKNNSSDRPSRSEGRLFARGVDEGKLMQFCKIIEASESSRWNNAQKDGTISRHGHNNQEAKCSFGEGDIGFSNVVKPSVQSLTFATLENNRSPWEIKNIHEANVQPSLSMYLGNASGKNSVLPSAGEAVEGRLEGKTSPPFHQGQRSRPIFPKPVKSGLTMNVEIDKGTISQSRVARPPADGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPSISQSEGVPLRMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMQLRAGDTVTFSRIDPGGKLVMGFRRASNSADTQDTSTSAQSNSAKGATSAGTENLPSGSNNANLLLSMKGNVETNINGQREHPLLATGTSGLLITETNGMMTNNTSLQRKVSVSEKKKTRNIGPKSKRLLIDNEDARELKLTWEEAQDLLRPPPSVKPSIVTIEDQVFEEYDEPPVFGKRTIFSTCSSGVKEQWAQCDDCSKWRKLPVDALLPANWTCFDNAWDSRRCSCTVPEELSSGELESLLKTDKDFKKRRSDEKSMSIQEHMASGLEALASAAALGDNLVDTAESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCACNVCLTVKRRFKTLMLRKKKRQSEREAEAAQKDQVLPKEESDTNETSRDDATQLEKEVVGLSRSQAEVGESSAAGQIDLNSDPNREDMVVDLSAIFFCESDPTTEHEYMNQNDPRSYNNELQNGENSSLHTPQSNGEGQRHFSDLRSFASIMWNQERRDEEDSEPNQNQNQNNLC 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium947g00020 878 MobiDBLite consensus disorder prediction 807 844 - -
Vium947g00020 878 CDD B3_DNA 302 403 IPR003340 GO:0003677
Vium947g00020 878 MobiDBLite consensus disorder prediction 719 786 - -
Vium947g00020 878 Gene3D - 282 409 IPR015300 -
Vium947g00020 878 FunFam B3 domain-containing transcription repressor VAL1 282 409 - -
Vium947g00020 878 MobiDBLite consensus disorder prediction 220 243 - -
Vium947g00020 878 Pfam B3 DNA binding domain 304 404 IPR003340 GO:0003677
Vium947g00020 878 Pfam CW-type Zinc Finger 571 613 IPR011124 GO:0008270
Vium947g00020 878 MobiDBLite consensus disorder prediction 807 878 - -
Vium947g00020 878 SUPERFAMILY DNA-binding pseudobarrel domain 302 403 IPR015300 -
Vium947g00020 878 MobiDBLite consensus disorder prediction 404 440 - -
Vium947g00020 878 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 826 - -
Vium947g00020 878 MobiDBLite consensus disorder prediction 403 440 - -
Vium947g00020 878 SMART B3_2 304 405 IPR003340 GO:0003677
Vium947g00020 878 Gene3D - 569 624 - -
Vium947g00020 878 MobiDBLite consensus disorder prediction 83 102 - -
Vium947g00020 878 ProSiteProfiles B3 DNA-binding domain profile. 304 405 IPR003340 GO:0003677
Vium947g00020 878 ProSiteProfiles Zinc finger CW-type profile. 566 616 IPR011124 GO:0008270
Vium947g00020 878 MobiDBLite consensus disorder prediction 722 759 - -
Vium947g00020 878 MobiDBLite consensus disorder prediction 768 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium947g00020 Vium-Chr947 217753 225188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium947g00020 1 791 B3 DNA Binding Superfamily AT2G30470 45.586 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium947g00020 B3 1.3e-17 CL0405