LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium947g00010	ATGAATCATCCACTTTTTCTCTCAAAGTACTTCACCAAAGCCAAGCTAAAAATAAGCACTTCAGCTTTCAAAACCATGGCTCAAACCCCATTTCTTCTGTTGTCAAATGTTCAAAGCTTTTGGCCTTCTTTGGTTGTCATAATCACCTGCTTCATCATTATGATCAAAACCCTAAGGTCTAACTTCATCCAGACTTATTCCAAGAAACAAAAGCCAAAGCTCCCTCCTGGACCCAAACCATGGCCCATTGTAGGCAATCTTCCTGAAATGCTTGCAAGCAAACCTGCTTATAAGTGGATACATAATCTCATGAAACAAATGAACACTGATATTGCTTGTATCCGCTTAGGAAATGCCTATGTCATCCCAGTCACATGTCCCACCATTGCTACCGAGTTCTTGAGAAAACAAGATGCTACTTTTGCATCAAGATCACTCAGCCTGTCCACTGATCTCATTACTAGTGGATATTCAACAACAATTTTTGTGCCCTTTGGTGACCAGTGGAAGAAAATGAAGAAAATCATAACCCACGATCTGCTTTCTCCACACAAACACCTATGGCTTCACGACAAAAGAACCGAAGAGGCTGACAACCTTATGTTTTACGTCTACAACAAGTGCAAAATGGTGAATGATGGTGTTTCTGGCCTTGTCAATGTTAGGAGTGCTGCGAGGCATTATTGTGGCAACCTTATCAGAAAAATTACTTTTAATGTAAGGTATTTTGGGGATGGCAGAGAGGATGGAGGGCCCGGCTTTGAAGAAGTAGAACATGTTGATTCCATCTTTGATTTGCTCAACTACATTTATTCCTTTTCTGTTTCTGATTATATGCCATGCTTGAGGGGACTTGATTTGGATGGCCATGAGAAGAAAGTGAAGGAAGCTTTGAGGAACGTTAAGAAGTATCATGACCCCATCGTTCACCAGAGAATCAAACAATGGAATGATGGTTTGAAGGTTGATGCAGAGGATTGGCTTGATGTTCTCATCTCACTCAAAGATGCCAACAATAATCCATCGTTAACATTGGAAGAGATCAGTGCACAAATCATAGAATTGATGCTTGCAACAGTGGACAATCCATCCAATGCATTTGAATGGGCACTTGCTGAGATGATTAACCAACCTGAGATACTGCGCCGAGCTGTCGAAGAATTGGACAGTGTGGTAGGAAAAGACAGGCTGGTCCAAGAATCAGACATACCTAATCTCAACTATGTGAAGGCATGTGCCAAAGAAGCTTTTCGTCTTCATCCCATTGCTCCTTTCATTCCTCCCCATGTCTCTATGAGTGACACTGTTGTGGGGAATTACTTCATCCCCAAGGGTAGCCACGTATTGCTAAGCAGACAAGAACTTGGAAGAAACCCAAAAGTGTGGAATGAACCCTACAAGTTCAAACCTGAACGCCACCTCAAGAGTGATGCAGATGATGTGGTTTTGACTGAACCAAATCTGAAGTTCATATCATTCAGCACAGGAAGACGAGGTTGTCCCGGAGTGATGTTAGGAACGACAATGACAGTGATGCTGTTTGCTAGATTGCTCCATGGCTTCACTTGGACTGCCCCACCCGATGTTCCAACAATCAACCTTTCTGAGTCAGACGATGATATCCTTCTTGCACAACCACTTCTTGCCATTGCTCAGCCAAGGTTACCACAAAAGCTATATCAACTCTAA	1689	0.4251	MNHPLFLSKYFTKAKLKISTSAFKTMAQTPFLLLSNVQSFWPSLVVIITCFIIMIKTLRSNFIQTYSKKQKPKLPPGPKPWPIVGNLPEMLASKPAYKWIHNLMKQMNTDIACIRLGNAYVIPVTCPTIATEFLRKQDATFASRSLSLSTDLITSGYSTTIFVPFGDQWKKMKKIITHDLLSPHKHLWLHDKRTEEADNLMFYVYNKCKMVNDGVSGLVNVRSAARHYCGNLIRKITFNVRYFGDGREDGGPGFEEVEHVDSIFDLLNYIYSFSVSDYMPCLRGLDLDGHEKKVKEALRNVKKYHDPIVHQRIKQWNDGLKVDAEDWLDVLISLKDANNNPSLTLEEISAQIIELMLATVDNPSNAFEWALAEMINQPEILRRAVEELDSVVGKDRLVQESDIPNLNYVKACAKEAFRLHPIAPFIPPHVSMSDTVVGNYFIPKGSHVLLSRQELGRNPKVWNEPYKFKPERHLKSDADDVVLTEPNLKFISFSTGRRGCPGVMLGTTMTVMLFARLLHGFTWTAPPDVPTINLSESDDDILLAQPLLAIAQPRLPQKLYQL	562

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium947g00010	562	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	493	502	IPR017972	GO:0005506\|GO:0016705
	Vium947g00010	562	PANTHER	CYTOCHROME P450 703A2-RELATED-RELATED	46	561	-	-
	Vium947g00010	562	SUPERFAMILY	Cytochrome P450	75	554	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vium947g00010	562	PRINTS	E-class P450 group I signature	451	475	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vium947g00010	562	PRINTS	E-class P450 group I signature	129	150	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vium947g00010	562	PRINTS	E-class P450 group I signature	500	523	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vium947g00010	562	PRINTS	E-class P450 group I signature	347	364	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vium947g00010	562	PRINTS	E-class P450 group I signature	367	393	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vium947g00010	562	PRINTS	E-class P450 group I signature	410	428	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vium947g00010	562	PRINTS	E-class P450 group I signature	490	500	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium947g00010	Vium-Chr947	143412	145249	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium947g00010	11	560	Cytochrome P450	AT4G39950	51.906	0.0	599

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium947g00010	-		K14984	gmx:100809902	944.495

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