Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium947g00006 ATGTGTTGGCAACGTGGGGAGGAAGAAAGACGAGAGATTGCGCGTTATTGTGTTAGAAACAGAGCATCGATCGGAAAAAACAGAACTCAGAAGGGAATGGCCACACAGACGCAAGATTCACCTTCAAACCCTAACCCTAATCCCAATGCCACGTCACCGACGCCGTCTTCTTCGTTGTTCTTTCGCGGCGCCGGTGCTTCCGCAGCTCCCTTCGCCGGCTCCGGCGAGTCCCACTCGCACCACCGGAGAGCACTCTCGGAGGTCAGTTACCGGCTTCCGGACGACATGATGGACCTCTCGCCGTCGGATCCGTTCAACGGCGGATCCTCGACGGCGAGCCTAGAGGAGATCGGATCCGAGGACGACCTCTTCTCCACCTACATTGACGTTGAAAAGCTCGGCAGTGGCGCTAACGGCGCCGGCCGCGGTGGAAATGGATCGGATCAGAGCGGTTACGGAAACGGCGCCGGTACTAGCGAACACAACGACGGCGAGAAGAGTCCGAGAGCTGCAGAGGCGCGGCCGAGACACCGGCACAGTAGCTCCGTCGACGGTTCCTCGTCGACAAACATGTTCGGAGAGATCATGGAAGCGAAGAAAGCAATGCCTCCTGATAAGCTAGCGGAACTTTGGAACATTGATCCAAAGCGTGCCAAGAGAATACTAGCTAATCGGCAATCTGCTGCGCGTTCAAAAGAAAGAAAGGCGCGCTATATACAAGAACTAGAGCGCAAAGTTCAGACCCTCCAAACCGAGGCAACAACACTTTCTGCCCAACTCACATTGTACCAGAGGGATACAACTGGTCTGAGTAGTGAAAATACCGAGCTTAAGCTCCGTCTCCAAGCCATGGAGCAACAGGCACAACTTCGTGATGCTCTTAATGATGCATTGATGAAGGAAGTTGAGAGGCTTAAGATTGCTACTGGCGAGGTATTGAACAACCACTCTGAGTCTTTCAATATGGGAATGCACCAGATGCCATTTGCAGGGTCAAATTTCTTTTCAATCCCACCACATTCAGGTCCTCCTAGTCACCAGAATATGCAGTTGCCTCCATATGGTCTCTCCCAATCTAGCATGCCAGCTCATCAGCTGCAACAAACAAATTCTCACCAAATCTCAGATATATTGCAAAACGACCAGCTTGGTCGTTTGCAGGGACTTGACATTAGTAGCAAAGGATCACCATTTGTGAAATCTGAAGGCCCTTCAATATCCGCAAATGATAGTAGTACTACGTTTTGA 1248 0.5152 MCWQRGEEERREIARYCVRNRASIGKNRTQKGMATQTQDSPSNPNPNPNATSPTPSSSLFFRGAGASAAPFAGSGESHSHHRRALSEVSYRLPDDMMDLSPSDPFNGGSSTASLEEIGSEDDLFSTYIDVEKLGSGANGAGRGGNGSDQSGYGNGAGTSEHNDGEKSPRAAEARPRHRHSSSVDGSSSTNMFGEIMEAKKAMPPDKLAELWNIDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSSENTELKLRLQAMEQQAQLRDALNDALMKEVERLKIATGEVLNNHSESFNMGMHQMPFAGSNFFSIPPHSGPPSHQNMQLPPYGLSQSSMPAHQLQQTNSHQISDILQNDQLGRLQGLDISSKGSPFVKSEGPSISANDSSTTF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium947g00006 415 SMART brlzneu 212 276 IPR004827 GO:0003700|GO:0006355
Vium947g00006 415 Gene3D - 215 267 - -
Vium947g00006 415 MobiDBLite consensus disorder prediction 142 161 - -
Vium947g00006 415 MobiDBLite consensus disorder prediction 162 181 - -
Vium947g00006 415 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 214 277 IPR004827 GO:0003700|GO:0006355
Vium947g00006 415 MobiDBLite consensus disorder prediction 23 45 - -
Vium947g00006 415 MobiDBLite consensus disorder prediction 338 370 - -
Vium947g00006 415 MobiDBLite consensus disorder prediction 94 113 - -
Vium947g00006 415 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 38 400 - -
Vium947g00006 415 Pfam bZIP transcription factor 216 274 IPR004827 GO:0003700|GO:0006355
Vium947g00006 415 CDD bZIP_plant_RF2 217 266 IPR044759 GO:0003700|GO:0006355
Vium947g00006 415 MobiDBLite consensus disorder prediction 398 415 - -
Vium947g00006 415 SUPERFAMILY Leucine zipper domain 216 267 IPR046347 GO:0003700|GO:0006355
Vium947g00006 415 MobiDBLite consensus disorder prediction 136 189 - -
Vium947g00006 415 FunFam probable transcription factor PosF21 215 268 - -
Vium947g00006 415 Coils Coil 232 259 - -
Vium947g00006 415 MobiDBLite consensus disorder prediction 394 415 - -
Vium947g00006 415 MobiDBLite consensus disorder prediction 337 370 - -
Vium947g00006 415 MobiDBLite consensus disorder prediction 17 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium947g00006 Vium-Chr947 74718 78353 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium947g00006 39 415 bZIP Transcription Factor Family AT2G40620 49.289 6.48e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium947g00006 bZIP_1 4.6e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium947g00006 - - gmx:100775607 606.675