Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium947g00003 ATGGACACGGACATTTCCCGGTGGGTGATGGAGTTCCTCCTCCGCAGTTCCGTCCCCGATTCCCTAATCCAAAAAGCCCTAATCGTCCTTCCTCTCTCCGGGGCCGACTCCCGCCTCAAGAAGACCCTTCTTCTTCGCACTCTCCGCACCCTCCTCCTCCAGGCCTCCCTCTCCGAAACTGCGCTCCAAATCTTCGAACACCTCGAAGAACTCGATGGTGACTCCACCTCCGTCGCGCTCCGCCGCGCGTACCTGGCCGTTGCCGTCGAGTGCACTGTCAAGTACCTCGCCGCCGCCCCCGATGACCCCGAGGGGGTGTTTTCTGGCGCCGTGAAGCGGATTTGGCGCGGCCGCGTGGCGGCACTGGAGGCGCGCCGGAGCGGGCTGGTGTCTGGCGAGCTGGCGCAGTGGCGGGACGACGTGGAGGCAGCGGTTGGAGATTCTAGGGCTTGCGAGAGGCTGGCGGATTTCAATAGCAGGAGGGAGGCGATGAAAGAGGTGAGGGCGTATTTGAAGGAAGCGTGGGAATCGATGGGTCCTTCGTTCTTGGAATCGGTTGCGGCGATGTCGAAGGGTTTAACCAAGGAGAAAGAGGATTTTGTTATTAGTGGTGACAGGTGTGATAATGATCAAGATAATGGAAATAACGGTGATCATGGCTGCATGGAGGGTGTGGCAATGCATGATGAGAATCAGACCAAACAACAATTGGAAGAGAAAATTGAGGCGAATCAGGAAGTGGGTGGATGTGACTTGCCACTTCAGGGAGATAAAGTAATTCAAAAGCGGAATCTTCGGGTTAAACACAAACACTCTGCACTTCGTGCATGTCATAGGGGAGTTAAAATAAATTATTCAGAGGAAGGACGGAGCAAACATGATTCTGTTCCTAGTTCTGAAGTAAAAGAAGTTAGAGAATCCCTTAAATCAAGTTCTTACGATTTAAGAGCATTGGTCAAGGATCCTCTTCCTGATGCATTGCATTTATCTGAAGCTGTAAGATCGAAATTGGCTACAAGTGATACAAATATTGAGCCACCTATTGAAAAGCAGAGTCCAGATGTAGATTTACCAGATCCAGATGTTTGCCAGACTATTGTACTTTTTCAGCCTAATGATGCCAATATTGGGAAGAAGTCTTCTGTTTATTGTAGTGATTTACATCAGCCCAACTTAATGGAACGAAACAGAAGTGCCCAGACATCTGAGTGGGATGATTCAATAGACAACTCGCCACAAGCAAGACAGCCTAAGAGGAGGAAAAGGAGATGGAGTTCTTTGGAAGAGGAGACACTAAGGGCCGGTGTAAAAATGTTTGGAGAAGGAAACTGGGCAACAATAAAAAGTTTTTACAGTAACATATTTGACAACAGAAGTGGAGTTGATCTGAAGGACAAGTGGAGAAATATGATACGATGA 1419 0.4926 MDTDISRWVMEFLLRSSVPDSLIQKALIVLPLSGADSRLKKTLLLRTLRTLLLQASLSETALQIFEHLEELDGDSTSVALRRAYLAVAVECTVKYLAAAPDDPEGVFSGAVKRIWRGRVAALEARRSGLVSGELAQWRDDVEAAVGDSRACERLADFNSRREAMKEVRAYLKEAWESMGPSFLESVAAMSKGLTKEKEDFVISGDRCDNDQDNGNNGDHGCMEGVAMHDENQTKQQLEEKIEANQEVGGCDLPLQGDKVIQKRNLRVKHKHSALRACHRGVKINYSEEGRSKHDSVPSSEVKEVRESLKSSSYDLRALVKDPLPDALHLSEAVRSKLATSDTNIEPPIEKQSPDVDLPDPDVCQTIVLFQPNDANIGKKSSVYCSDLHQPNLMERNRSAQTSEWDDSIDNSPQARQPKRRKRRWSSLEEETLRAGVKMFGEGNWATIKSFYSNIFDNRSGVDLKDKWRNMIR 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium947g00003 472 CDD SANT_TRF 422 472 - -
Vium947g00003 472 MobiDBLite consensus disorder prediction 395 426 - -
Vium947g00003 472 ProSiteProfiles Myb-like domain profile. 416 471 IPR001005 -
Vium947g00003 472 Gene3D - 412 472 - -
Vium947g00003 472 MobiDBLite consensus disorder prediction 395 411 - -
Vium947g00003 472 Pfam Myb-like DNA-binding domain 421 470 IPR001005 -
Vium947g00003 472 SUPERFAMILY Homeodomain-like 418 471 IPR009057 -
Vium947g00003 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 416 472 IPR017930 -
Vium947g00003 472 MobiDBLite consensus disorder prediction 337 359 - -
Vium947g00003 472 SMART sant 420 472 IPR001005 -
Vium947g00003 472 PANTHER MYB TRANSCRIPTION FACTOR 1 472 - -
Vium947g00003 472 Coils Coil 227 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium947g00003 Vium-Chr947 40819 44944 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium947g00003 424 471 Single Myb Histone (SMH) Gene Family AT1G15720 52.083 9.17e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium947g00003 Myb_DNA-binding 7.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium947g00003 - K11111 vun:114187915 766.918