Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium947g00002 ATGCTGAAGAAGATCGAGGAACTCAGCACCCTTTGTGGAATTGATGCATGTGCTATAGTTTATGGTCCCGATGATCATGAACCAGAGGTTTGGCCATCCCATTGTGAGGTCCAAAAGGTGGTGGGAAGGTTCAGGAACATGCCTGCAGTGGAGAAAATCAAGAAGATGGTGAACCAGGAGAGCTTCATAGGACAAAGGATCCAAAAGGGTAACCAACAAATAATGAAACTTAGGAAGGAGAATGCGGAGAAGGAGTTCACCTTGTTCATGTTTCAATGCCTTACTGAAGGTAGGGTTTTGCCAGATGAAAATAACATGACCTTGGCTGATTTGAATGTCCTTTCATCAGTGATTGAACAAAACCTTAAAGACATTGATAAAAGGTTGCAAACTCTGAATGTTAATCAGATACAACCGACTCAACAACCCGAGATGCAAACATCAGTATTCCAATCGCAGTTGAAAACAACATCGTACCAACCGCATTTGCAAATGGCACTTATGAGTTCTGGACATGGGTTGGATATGGATGTCAATCCCATCCAAAGGTTGTTGTTTATGAACTTGTTTAATGGTAATAGAGATGAGACAATAATGCCTCCATTTGGTGATCCTAATCTCTAG 624 0.4151 MLKKIEELSTLCGIDACAIVYGPDDHEPEVWPSHCEVQKVVGRFRNMPAVEKIKKMVNQESFIGQRIQKGNQQIMKLRKENAEKEFTLFMFQCLTEGRVLPDENNMTLADLNVLSSVIEQNLKDIDKRLQTLNVNQIQPTQQPEMQTSVFQSQLKTTSYQPHLQMALMSSGHGLDMDVNPIQRLLFMNLFNGNRDETIMPPFGDPNL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium947g00002 207 CDD MADS_SRF_like 1 58 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vium947g00002 207 Gene3D - 1 69 IPR036879 GO:0003677|GO:0046983
Vium947g00002 207 SUPERFAMILY SRF-like 1 68 IPR036879 GO:0003677|GO:0046983
Vium947g00002 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 2 25 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium947g00002 Vium-Chr947 25214 25852 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium947g00002 5 132 Type I MADS-box Gene Family AT5G48670 47.656 6.80e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium947g00002 SRF-TF 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium947g00002 - - vra:106752453 396.356