Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium947g00001 ATGACAGGGAGAAAGGTGAAACTGGCATTCATAGCCAATGATTGTGCCAGGAGGGCATCGTATAGAAGAAGGAAGAAGTCAATGTTGAAGAAGATTGAAGAACTGAGCACCCTTTGTGGAGTAGAAGCTTGTGCCATAGTGTATAGCCCCTTTGATCAAGAGGCACAGATTTGGCCATCTGAATCAGGTGTGCAGAATGTGGTTGAAAGGTTCAGGACTATGCCTGAATGGAAGAAGCACAAGATGGGGAATCAGGAGAGTGTCATGGAAAAGAGTATTATGAAGGGTAAAAGGAAGATTGCGAAACTTGAAGAAGAGAATAAGGAAATGGAGATTACCATGTTCATGTTTCAATGCCTTGATACAACTAGGGTTCAGCATCAACAAAACATGACTTTGGAAGATTTGAATCTTCTGTCATCGGTGATTGAACAGAAACTGAACGACGTTAGTAGAAGGTTGGATTTGACAGATGTTACTGAGGTACCATACCAATCCCAGATACAAACATTTGTTGATACTAATCTTAAACTCTAA 537 0.4078 MTGRKVKLAFIANDCARRASYRRRKKSMLKKIEELSTLCGVEACAIVYSPFDQEAQIWPSESGVQNVVERFRTMPEWKKHKMGNQESVMEKSIMKGKRKIAKLEEENKEMEITMFMFQCLDTTRVQHQQNMTLEDLNLLSSVIEQKLNDVSRRLDLTDVTEVPYQSQIQTFVDTNLKL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium947g00001 178 Coils Coil 93 113 - -
Vium947g00001 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Vium947g00001 178 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vium947g00001 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium947g00001 178 FunFam agamous-like MADS-box protein AGL80 13 96 - -
Vium947g00001 178 CDD MADS_SRF_like 2 76 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vium947g00001 178 Gene3D - 14 100 IPR036879 GO:0003677|GO:0046983
Vium947g00001 178 PANTHER MADS BOX PROTEIN 5 138 - -
Vium947g00001 178 SUPERFAMILY SRF-like 4 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium947g00001 Vium-Chr947 2666 3202 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium947g00001 1 156 Type I MADS-box Gene Family AT5G48670 47.134 1.89e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium947g00001 SRF-TF 9.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium947g00001 - - pvu:PHAVU_006G077900g 303.138