Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium946g00016 ATGTTAGCTTTGGAAAAGATAGTGATTAAAGAAATGTTGTCTGCCTCAGCATTGGATCATTCACACACGCCAGAGAGGAAGAACATCACCACCAACACCACCAACACCACCAGCACAACCAACAGCAGCAGCAGAAAAAGATTTGGTAGTAGTAAGAAATTGATGGATGAGTATTCTGGTAGAAGAGGTGTGGATGGGGTGGCAGTCCCTAGAAAGGGGATGACCCATGTATTTAGAGATACTGCTAATACTAGAGAGCGAACAGGGCAAGTTTGCAGCAAATTAGGTTGCAGTAGTAGAGCCAATATTCCCAAAGTTGCTCAAGTCAGATCTTCTGAAAAGGGTAAATCTGTGAGGCCTTTATTCCAGTCCTCTTCAACTAGCAAAGAAGAAATTGGAAGTTCCTCTAGATCTACTAGTAACCCGGCAAAACGAAATACGGAACCACGGAAAATATTATCCTCTCAGTTTGAAGCAGATTCCCCTGAAAGTAGTAGTGTACAGGATGAACCAGAATCTTCAGAGCTCATCCCTCCATCAGAAGAAATTCAGAGAGGGCCTAAATCCAGGGGGGGAAGTTCAGAGTCTAGTAATGTGAGACTGATGGAAGTAGGAAGCTCCAGTTCAGTATCAAATACTAGATCTCAAAGGAATTTAAATCAAAGATCTGGATTGCGTGGACAAGAAATCAAAAGCACTGGTCCAGTGACACATGCTGTTTCAAGCCGGTATGGATTGAGGAACATCAGATGCAACACTATATCTGATGTCATCCCATCTGGTTGTTCATCATCAGATTCAAGTCATAATAGAAGGAAGGATACAATAAAAAAGAGAGACGGTGAAGGGGAAAGTAGTTCCACTGTCAGAGGGAAGAATATTATTGGATCTTCACTGGAAGGACGTAATTCTGGCTCCAGAAATGGCATATCTATATCTGATTCAAGAAGAACAAGAAATACATTTTCTCACCGGAATACCAGTTTGACACCAGTAAGAACTCAAAGATCACTTAGTGGTCATGCCAGGGGAAGGCTTTCTAGCCAAGGAAATGAAAACCCTTTGGCAACCAGTGAGTTCCCACATTCTGGTGATGTTAATCCTCATGGCATTTCATGTCAGATTTCTGTGGAGACTCCATTAACTTGCTCAAGCTCTTGTCATTCACCAGGCAATAGCAGTGAGGACTTACCTCTGTCTCCTCCGGCAGAAGATGACATCACTGATTCTCTAAATGGGGACAACTTTTGGCATTACAATATGTCCAGTATTGAAGGGGTTGTATTGGCCCTTGAGAGGATTGAACAAGGTGGAGAGCTAACCCGTGAGCAAATTCTTATGTTCGGGACAGACATCTACGAGAATGGATTAAACTTTTATGATCACCACAGAGACATGCGGTTGGATATTGATAACATGTCCTATGAGGAACTCTTAGCCCTGGAAGAGAGGATGGGAACTGTGAGCACAGCTCTATCAGAGGAAGCACTTGCAGAATCTCTTAAAAGAAGTATATATCAGTCTCCACCTACACATGACACACATGAGAATTGTAATGAAGATAAGGATGACATCAAATGCTGCATTTGCCAGGTATTTTTATAA 1605 0.4231 MLALEKIVIKEMLSASALDHSHTPERKNITTNTTNTTSTTNSSSRKRFGSSKKLMDEYSGRRGVDGVAVPRKGMTHVFRDTANTRERTGQVCSKLGCSSRANIPKVAQVRSSEKGKSVRPLFQSSSTSKEEIGSSSRSTSNPAKRNTEPRKILSSQFEADSPESSSVQDEPESSELIPPSEEIQRGPKSRGGSSESSNVRLMEVGSSSSVSNTRSQRNLNQRSGLRGQEIKSTGPVTHAVSSRYGLRNIRCNTISDVIPSGCSSSDSSHNRRKDTIKKRDGEGESSSTVRGKNIIGSSLEGRNSGSRNGISISDSRRTRNTFSHRNTSLTPVRTQRSLSGHARGRLSSQGNENPLATSEFPHSGDVNPHGISCQISVETPLTCSSSCHSPGNSSEDLPLSPPAEDDITDSLNGDNFWHYNMSSIEGVVLALERIEQGGELTREQILMFGTDIYENGLNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALSEEALAESLKRSIYQSPPTHDTHENCNEDKDDIKCCICQVFL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium946g00016 534 MobiDBLite consensus disorder prediction 27 48 - -
Vium946g00016 534 MobiDBLite consensus disorder prediction 105 237 - -
Vium946g00016 534 MobiDBLite consensus disorder prediction 187 237 - -
Vium946g00016 534 MobiDBLite consensus disorder prediction 19 50 - -
Vium946g00016 534 MobiDBLite consensus disorder prediction 117 173 - -
Vium946g00016 534 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 193 531 IPR045191 GO:0061630
Vium946g00016 534 MobiDBLite consensus disorder prediction 382 407 - -
Vium946g00016 534 MobiDBLite consensus disorder prediction 255 367 - -
Vium946g00016 534 MobiDBLite consensus disorder prediction 382 396 - -
Vium946g00016 534 MobiDBLite consensus disorder prediction 287 360 - -
Vium946g00016 534 MobiDBLite consensus disorder prediction 267 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium946g00016 Vium-Chr946 178660 183643 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium946g00016 421 531 C3H Transcription Factor Family AT2G15530 43.363 1.15e-19 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium946g00016 - - vum:124824270 1006.13