Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium946g00015 ATGTTAGCTTTGGAAAAGATAGTGATTAAAGAAATGTTGTCTGCCTCAGCATTGGATCATTCACACACGCCAGAGAGGAAGAACATCACCACCAACACCACCAACACCACCAGCACAACCAACAGCAGCAGCAGAAAAAGATTTGGTAGTAGTAAGAAATTGATGGATGAGTATTCTGGTAGAAGAGGTGTGGATGGGGTGGCAGTCCCTAGAAAGGGGATGACCCATGTATTTAGAGATACTGCTAATACTAGAGAGCGAACAGGGCAAGTTTGCAGCAAATTAGGTTGCAGTAGTAGAGCCAATATTCCCAAAGTTGCTCAAGTCAGATCTTCTGAAAAGGGTAAATCTGTGAGGCCTTTATTCCAGTCCTCTTCAACTAGCAAAGAAGAAATTGGAAGTTCCTCTAGATCTACTAGTAACCCGGCAAAACGAAATACGGAACCACGGAAAATATTATCCTCTCAGTTTGAAGCAGATTCCCCTGAAAGTAGTAGTGTACAGGATGAACCAGAATCTTCAGAGCTCATCCCTCCATCAGAAGAAATTCAGAGAGGGCCTAAATCCAGGGGGGGAAGTTCAGAGTCTAGTAATGTGAGACTGATGGAAGTAGGAAGCTCCAGTTCAGTATCAAATACTAGATCTCAAAGGAATTTAAATCAAAGATCTGGATTGCGTGGACAAGAAATCAAAAGCACTGGTCCAGTGACACATGCTGTTTCAAGCCGGTATGGATTGAGGAACATCAGATGCAACACTATATCTGATGTCATCCCATCTGGTTGTTCATCATCAGATTCAAGTCATAATAGAAGGAAGGATACAATAAAAAAGAGAGACGGTGAAGGGGAAAGTAGTTCCACTGTCAGAGGGAAGAATATTATTGGATCTTCACTGGAAGGACGTAATTCTGGCTCCAGAAATGGCATATCTATATCTGATTCAAGAAGAACAAGAAATACATTTTCTCACCGGAATACCAGTTTGACACCAGTAAGAACTCAAAGATCACTTAGTGGTCATGCCAGGGGAAGGCTTTCTAGCCAAGGAAATGAAAACCCTTTGGCAACCAGTGAGTTCCCACATTCTGGTGATGTTAATCCTCATGGCATTTCATGTCAGATTTCTGTGGAGACTCCATTAACTTGCTCAAGCTCTTGTCATTCACCAGGCAATAGCAGTGAGGACTTACCTCTGTCTCCTCCGGCAGAAGATGACATCACTGATTCTCTAAATGGGGACAACTTTTGGCATTACAATATGTCCAGTATTGAAGGGGTTGTATTGGCCCTTGAGAGGATTGAACAAGGTGGAGAGCTAACCCGTGAGCAAATTCTTATGTTCGGGACAGACATCTACGAGAATGGATTAAACTTTTATGATCACCACAGAGACATGCGGTTGGATATTGATAACATGTCCTATGAGGAACTCTTAGCCCTGGAAGAGAGGATGGGAACTGTGAGCACAGCTCTATCAGAGGAAGCACTTGCAGAATCTCTTAAAAGAAGTATATATCAGTCTCCACCTACACATGACACACATGAGAATTGTAATGAAGATAAGGATGACATCAAATGCTGCATTTGCCAGGAGGAATATGTTATTGGAGATGAAGTTGGGGACCTGCCATGCAAGCATAGGTTTCATGTGGATTGTATACAGGAATGGATGGGGCTGAAGAACTGGTGCCCTATTTGTAAATTATCTGCTGCACTGTCTAATAATTCATCTTCACCTCATTGA 1746 0.425 MLALEKIVIKEMLSASALDHSHTPERKNITTNTTNTTSTTNSSSRKRFGSSKKLMDEYSGRRGVDGVAVPRKGMTHVFRDTANTRERTGQVCSKLGCSSRANIPKVAQVRSSEKGKSVRPLFQSSSTSKEEIGSSSRSTSNPAKRNTEPRKILSSQFEADSPESSSVQDEPESSELIPPSEEIQRGPKSRGGSSESSNVRLMEVGSSSSVSNTRSQRNLNQRSGLRGQEIKSTGPVTHAVSSRYGLRNIRCNTISDVIPSGCSSSDSSHNRRKDTIKKRDGEGESSSTVRGKNIIGSSLEGRNSGSRNGISISDSRRTRNTFSHRNTSLTPVRTQRSLSGHARGRLSSQGNENPLATSEFPHSGDVNPHGISCQISVETPLTCSSSCHSPGNSSEDLPLSPPAEDDITDSLNGDNFWHYNMSSIEGVVLALERIEQGGELTREQILMFGTDIYENGLNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALSEEALAESLKRSIYQSPPTHDTHENCNEDKDDIKCCICQEEYVIGDEVGDLPCKHRFHVDCIQEWMGLKNWCPICKLSAALSNNSSSPH 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium946g00015 581 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 193 571 IPR045191 GO:0061630
Vium946g00015 581 MobiDBLite consensus disorder prediction 105 237 - -
Vium946g00015 581 SMART ring_2 527 567 IPR001841 -
Vium946g00015 581 MobiDBLite consensus disorder prediction 382 407 - -
Vium946g00015 581 MobiDBLite consensus disorder prediction 27 48 - -
Vium946g00015 581 ProSiteProfiles Zinc finger RING-type profile. 527 568 IPR001841 -
Vium946g00015 581 MobiDBLite consensus disorder prediction 187 237 - -
Vium946g00015 581 MobiDBLite consensus disorder prediction 19 50 - -
Vium946g00015 581 MobiDBLite consensus disorder prediction 117 173 - -
Vium946g00015 581 MobiDBLite consensus disorder prediction 255 367 - -
Vium946g00015 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 489 572 IPR013083 -
Vium946g00015 581 MobiDBLite consensus disorder prediction 382 396 - -
Vium946g00015 581 SUPERFAMILY RING/U-box 521 571 - -
Vium946g00015 581 MobiDBLite consensus disorder prediction 287 360 - -
Vium946g00015 581 FunFam E3 ubiquitin-protein ligase arkadia 489 573 - -
Vium946g00015 581 MobiDBLite consensus disorder prediction 267 286 - -
Vium946g00015 581 Pfam Ring finger domain 526 568 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium946g00015 Vium-Chr946 178294 183641 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium946g00015 421 571 C3H Transcription Factor Family AT2G15530 47.712 1.29e-38 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium946g00015 - - vum:124824270 1097.03