Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium946g00014 ATGTTAGCTTTGGAAAAGATAGTGATTAAAGAAATGTTGTCTGCCTCAGCATTGGATCATTCACACACGCCAGAGAGGAAGAACATCACCACCAACACCACCAACACCACCAGCACAACCAACAGCAGCAGCAGAAAAAGATTTGGTAGTAGTAAGAAATTGATGGATGAGTATTCTGGTAGAAGAGGTGTGGATGGGGTGGCAGTCCCTAGAAAGGGGATGACCCATGTATTTAGAGATACTGCTAATACTAGAGAGCGAACAGGGCAAGTTTGCAGCAAATTAGGTTGCAGTAGTAGAGCCAATATTCCCAAAGTTGCTCAAGTCAGATCTTCTGAAAAGGGTAAATCTGTGAGGCCTTTATTCCAGTCCTCTTCAACTAGCAAAGAAGAAATTGGAAGTTCCTCTAGATCTACTAGTAACCCGGCAAAACGAAATACGGAACCACGGAAAATATTATCCTCTCAGTTTGAAGCAGATTCCCCTGAAAGTAGTAGTGTACAGGATGAACCAGAATCTTCAGAGCTCATCCCTCCATCAGAAGAAATTCAGAGAGGGCCTAAATCCAGGGGGGGAAGTTCAGAGTCTAGTAATGTGAGACTGATGGAAGTAGGAAGCTCCAGTTCAGTATCAAATACTAGATCTCAAAGGAATTTAAATCAAAGATCTGGATTGCGTGGACAAGAAATCAAAAGCACTGGTCCAGTGACACATGCTGTTTCAAGCCGGTATGGATTGAGGAACATCAGATGCAACACTATATCTGATGTCATCCCATCTGGTTGTTCATCATCAGATTCAAGTCATAATAGAAGGAAGGATACAATAAAAAAGAGAGACGGTGAAGGGGAAAGTAGTTCCACTGTCAGAGGGAAGAATATTATTGGATCTTCACTGGAAGGACGTAATTCTGGCTCCAGAAATGGCATATCTATATCTGATTCAAGAAGAACAAGAAATACATTTTCTCACCGGAATACCAGTTTGACACCAGTAAGAACTCAAAGATCACTTAGTGGTCATGCCAGGGGAAGGCTTTCTAGCCAAGGAAATGAAAACCCTTTGGCAACCAGCAATAGCAGTGAGGACTTACCTCTGTCTCCTCCGGCAGAAGATGACATCACTGATTCTCTAAATGGGGACAACTTTTGGCATTACAATATGTCCAGTATTGAAGGGGTTGTATTGGCCCTTGAGAGGATTGAACAAGGTGGAGAGCTAACCCGTGAGCAAATTCTTATGTTCGGGACAGACATCTACGAGAATGGATTAAACTTTTATGATCACCACAGAGACATGCGGTTGGATATTGATAACATGTCCTATGAGGAACTCTTAGCCCTGGAAGAGAGGATGGGAACTGTGAGCACAGCTCTATCAGAGGAAGCACTTGCAGAATCTCTTAAAAGAAGTATATATCAGTCTCCACCTACACATGACACACATGAGAATTGTAATGAAGATAAGGATGACATCAAATGCTGCATTTGCCAGGAGGAATATGTTATTGGAGATGAAGTTGGGGACCTGCCATGCAAGCATAGGTTTCATGTGGATTGTATACAGGAATGGATGGGGCTGAAGAACTGGTGCCCTATTTGTAAATTATCTGCTGCACTGTCTAATAATTCATCTTCACCTCATTGA 1647 0.4244 MLALEKIVIKEMLSASALDHSHTPERKNITTNTTNTTSTTNSSSRKRFGSSKKLMDEYSGRRGVDGVAVPRKGMTHVFRDTANTRERTGQVCSKLGCSSRANIPKVAQVRSSEKGKSVRPLFQSSSTSKEEIGSSSRSTSNPAKRNTEPRKILSSQFEADSPESSSVQDEPESSELIPPSEEIQRGPKSRGGSSESSNVRLMEVGSSSSVSNTRSQRNLNQRSGLRGQEIKSTGPVTHAVSSRYGLRNIRCNTISDVIPSGCSSSDSSHNRRKDTIKKRDGEGESSSTVRGKNIIGSSLEGRNSGSRNGISISDSRRTRNTFSHRNTSLTPVRTQRSLSGHARGRLSSQGNENPLATSNSSEDLPLSPPAEDDITDSLNGDNFWHYNMSSIEGVVLALERIEQGGELTREQILMFGTDIYENGLNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALSEEALAESLKRSIYQSPPTHDTHENCNEDKDDIKCCICQEEYVIGDEVGDLPCKHRFHVDCIQEWMGLKNWCPICKLSAALSNNSSSPH 548
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium946g00014 548 SUPERFAMILY RING/U-box 488 538 - -
Vium946g00014 548 MobiDBLite consensus disorder prediction 255 375 - -
Vium946g00014 548 MobiDBLite consensus disorder prediction 105 237 - -
Vium946g00014 548 SMART ring_2 494 534 IPR001841 -
Vium946g00014 548 Pfam Ring finger domain 493 535 IPR001841 -
Vium946g00014 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 456 539 IPR013083 -
Vium946g00014 548 ProSiteProfiles Zinc finger RING-type profile. 494 535 IPR001841 -
Vium946g00014 548 MobiDBLite consensus disorder prediction 27 48 - -
Vium946g00014 548 FunFam E3 ubiquitin-protein ligase arkadia 456 540 - -
Vium946g00014 548 MobiDBLite consensus disorder prediction 187 237 - -
Vium946g00014 548 MobiDBLite consensus disorder prediction 117 173 - -
Vium946g00014 548 MobiDBLite consensus disorder prediction 19 50 - -
Vium946g00014 548 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 110 538 IPR045191 GO:0061630
Vium946g00014 548 MobiDBLite consensus disorder prediction 267 286 - -
Vium946g00014 548 MobiDBLite consensus disorder prediction 287 365 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium946g00014 Vium-Chr946 178294 183641 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium946g00014 388 538 C3H Transcription Factor Family AT2G15530 47.712 6.63e-39 149
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium946g00014 - - vum:124824270 1015.37