Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium946g00014 | ATGTTAGCTTTGGAAAAGATAGTGATTAAAGAAATGTTGTCTGCCTCAGCATTGGATCATTCACACACGCCAGAGAGGAAGAACATCACCACCAACACCACCAACACCACCAGCACAACCAACAGCAGCAGCAGAAAAAGATTTGGTAGTAGTAAGAAATTGATGGATGAGTATTCTGGTAGAAGAGGTGTGGATGGGGTGGCAGTCCCTAGAAAGGGGATGACCCATGTATTTAGAGATACTGCTAATACTAGAGAGCGAACAGGGCAAGTTTGCAGCAAATTAGGTTGCAGTAGTAGAGCCAATATTCCCAAAGTTGCTCAAGTCAGATCTTCTGAAAAGGGTAAATCTGTGAGGCCTTTATTCCAGTCCTCTTCAACTAGCAAAGAAGAAATTGGAAGTTCCTCTAGATCTACTAGTAACCCGGCAAAACGAAATACGGAACCACGGAAAATATTATCCTCTCAGTTTGAAGCAGATTCCCCTGAAAGTAGTAGTGTACAGGATGAACCAGAATCTTCAGAGCTCATCCCTCCATCAGAAGAAATTCAGAGAGGGCCTAAATCCAGGGGGGGAAGTTCAGAGTCTAGTAATGTGAGACTGATGGAAGTAGGAAGCTCCAGTTCAGTATCAAATACTAGATCTCAAAGGAATTTAAATCAAAGATCTGGATTGCGTGGACAAGAAATCAAAAGCACTGGTCCAGTGACACATGCTGTTTCAAGCCGGTATGGATTGAGGAACATCAGATGCAACACTATATCTGATGTCATCCCATCTGGTTGTTCATCATCAGATTCAAGTCATAATAGAAGGAAGGATACAATAAAAAAGAGAGACGGTGAAGGGGAAAGTAGTTCCACTGTCAGAGGGAAGAATATTATTGGATCTTCACTGGAAGGACGTAATTCTGGCTCCAGAAATGGCATATCTATATCTGATTCAAGAAGAACAAGAAATACATTTTCTCACCGGAATACCAGTTTGACACCAGTAAGAACTCAAAGATCACTTAGTGGTCATGCCAGGGGAAGGCTTTCTAGCCAAGGAAATGAAAACCCTTTGGCAACCAGCAATAGCAGTGAGGACTTACCTCTGTCTCCTCCGGCAGAAGATGACATCACTGATTCTCTAAATGGGGACAACTTTTGGCATTACAATATGTCCAGTATTGAAGGGGTTGTATTGGCCCTTGAGAGGATTGAACAAGGTGGAGAGCTAACCCGTGAGCAAATTCTTATGTTCGGGACAGACATCTACGAGAATGGATTAAACTTTTATGATCACCACAGAGACATGCGGTTGGATATTGATAACATGTCCTATGAGGAACTCTTAGCCCTGGAAGAGAGGATGGGAACTGTGAGCACAGCTCTATCAGAGGAAGCACTTGCAGAATCTCTTAAAAGAAGTATATATCAGTCTCCACCTACACATGACACACATGAGAATTGTAATGAAGATAAGGATGACATCAAATGCTGCATTTGCCAGGAGGAATATGTTATTGGAGATGAAGTTGGGGACCTGCCATGCAAGCATAGGTTTCATGTGGATTGTATACAGGAATGGATGGGGCTGAAGAACTGGTGCCCTATTTGTAAATTATCTGCTGCACTGTCTAATAATTCATCTTCACCTCATTGA | 1647 | 0.4244 | MLALEKIVIKEMLSASALDHSHTPERKNITTNTTNTTSTTNSSSRKRFGSSKKLMDEYSGRRGVDGVAVPRKGMTHVFRDTANTRERTGQVCSKLGCSSRANIPKVAQVRSSEKGKSVRPLFQSSSTSKEEIGSSSRSTSNPAKRNTEPRKILSSQFEADSPESSSVQDEPESSELIPPSEEIQRGPKSRGGSSESSNVRLMEVGSSSSVSNTRSQRNLNQRSGLRGQEIKSTGPVTHAVSSRYGLRNIRCNTISDVIPSGCSSSDSSHNRRKDTIKKRDGEGESSSTVRGKNIIGSSLEGRNSGSRNGISISDSRRTRNTFSHRNTSLTPVRTQRSLSGHARGRLSSQGNENPLATSNSSEDLPLSPPAEDDITDSLNGDNFWHYNMSSIEGVVLALERIEQGGELTREQILMFGTDIYENGLNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALSEEALAESLKRSIYQSPPTHDTHENCNEDKDDIKCCICQEEYVIGDEVGDLPCKHRFHVDCIQEWMGLKNWCPICKLSAALSNNSSSPH | 548 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium946g00014 | 548 | SUPERFAMILY | RING/U-box | 488 | 538 | - | - | |
Vium946g00014 | 548 | MobiDBLite | consensus disorder prediction | 255 | 375 | - | - | |
Vium946g00014 | 548 | MobiDBLite | consensus disorder prediction | 105 | 237 | - | - | |
Vium946g00014 | 548 | SMART | ring_2 | 494 | 534 | IPR001841 | - | |
Vium946g00014 | 548 | Pfam | Ring finger domain | 493 | 535 | IPR001841 | - | |
Vium946g00014 | 548 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 456 | 539 | IPR013083 | - | |
Vium946g00014 | 548 | ProSiteProfiles | Zinc finger RING-type profile. | 494 | 535 | IPR001841 | - | |
Vium946g00014 | 548 | MobiDBLite | consensus disorder prediction | 27 | 48 | - | - | |
Vium946g00014 | 548 | FunFam | E3 ubiquitin-protein ligase arkadia | 456 | 540 | - | - | |
Vium946g00014 | 548 | MobiDBLite | consensus disorder prediction | 187 | 237 | - | - | |
Vium946g00014 | 548 | MobiDBLite | consensus disorder prediction | 117 | 173 | - | - | |
Vium946g00014 | 548 | MobiDBLite | consensus disorder prediction | 19 | 50 | - | - | |
Vium946g00014 | 548 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF165 | 110 | 538 | IPR045191 | GO:0061630 | |
Vium946g00014 | 548 | MobiDBLite | consensus disorder prediction | 267 | 286 | - | - | |
Vium946g00014 | 548 | MobiDBLite | consensus disorder prediction | 287 | 365 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium946g00014 | Vium-Chr946 | 178294 | 183641 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium946g00014 | 388 | 538 | C3H Transcription Factor Family | AT2G15530 | 47.712 | 6.63e-39 | 149 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium946g00014 | - | - | vum:124824270 | 1015.37 |