Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium946g00009 ATGCCAGGGTTAACGTGCAACGCTTGCAACACGGAATTCAAAGATGACACTGAGCAAAAGCTCCATTACAAGTCCGAGTGGCACCGCTACAATCTCAAACGCAAGGTGGCTGGTGTTCCTGGGGTGACAGAAGCACTATTTCTGGCTAGGCAATCTGTGATTGCTCAAGAGAAGAATAAAGTGAGTGAGACCCCAATGCTGTATACCTGCGGTCTTTGTGGAAAGGATTATAAAAGTTCTAAAGCTCATGCTGAGCACCTTAAATCACGTGGTCATATGATGCGGGCCTCTGAAGGAGCTAGTGATGCAGATGAGAAGGCAATAATTAAGCCACTTCCACAACGTGTTGTGAATAGACCTCCTCCTAGAAGAGAGGTAGATAACTCTGAAAATGAAGAAAGTGAAGATGAATGGGAGGAGGTTGATCCTGAAGATGATTTGGTTGATGGGGCTGCAAAGTCCTTGACTGGTTTGAATGTGAATGAGCAAGGTGAAAATGTTGATATGGATGAAGATGAAGATGACAATGATGAGGATGACTTTGAGTTAGATCCCTCATGTTGCTTTATGTGTGATCAAAAGCACAAAACAATTGAAGACTGCATGGTTCACATGCACAAGCATCACGGATTCTTCATTCCAGATGTTGAGTATTTGAAGGATCCAAAAGGCCTCCTCACATATCTTGGCCTTAGGGTCAAAAGGGACTACGAGTGTCTGTACTGCAATGATCGATGTTATCCTTTCAGCAGCTTAGAAGCAGTCAGGAAACATATGGCAGCAAAAAGCCATTGTAAAGTGCACTTTGGTGATGGTGATGATGAGGAAGAGGTAGAGTTAGAAGAGTTCTATGACTACAGCAGTAGTTATGTGGATGATCAGGGCAAGCAGCTCATTGTATCTGGTGAAACAGCTAACAATGTAGAACTTGTTGGTGGGTCTGAGCTCGTAATCACCAGGAAATCTGGTGATAGAATATCAACCAGAACACTTGGTTCTCGTGAATTTTTGCGTTACTATCGTCAGAAACCCCGACCATCACCAGCAAATAGTATGGCCATTACTGCTGCGTTGGCTTCAAGGTACAGGAGCATGGGTTTGACCACTGTCCAATCAAGGGAGCAAATTGTGAGGATGAAAGTGCTGAAGGAAATGAATAGGTCAGGTGTGGAGAATATGCGTTCCAAGATAGCAATGAAGAGTAATGTTATCCGAAACCTGCCAAATAATGTCCCATATTAG 1242 0.4364 MPGLTCNACNTEFKDDTEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSVIAQEKNKVSETPMLYTCGLCGKDYKSSKAHAEHLKSRGHMMRASEGASDADEKAIIKPLPQRVVNRPPPRREVDNSENEESEDEWEEVDPEDDLVDGAAKSLTGLNVNEQGENVDMDEDEDDNDEDDFELDPSCCFMCDQKHKTIEDCMVHMHKHHGFFIPDVEYLKDPKGLLTYLGLRVKRDYECLYCNDRCYPFSSLEAVRKHMAAKSHCKVHFGDGDDEEEVELEEFYDYSSSYVDDQGKQLIVSGETANNVELVGGSELVITRKSGDRISTRTLGSREFLRYYRQKPRPSPANSMAITAALASRYRSMGLTTVQSREQIVRMKVLKEMNRSGVENMRSKIAMKSNVIRNLPNNVPY 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium946g00009 413 PANTHER ZINC FINGER PROTEIN 622 2 412 IPR040025 -
Vium946g00009 413 SUPERFAMILY beta-beta-alpha zinc fingers 171 246 IPR036236 -
Vium946g00009 413 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Vium946g00009 413 MobiDBLite consensus disorder prediction 113 179 - -
Vium946g00009 413 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Vium946g00009 413 SMART c2h2final6 186 208 IPR013087 -
Vium946g00009 413 SMART c2h2final6 237 264 IPR013087 -
Vium946g00009 413 SMART c2h2final6 68 92 IPR013087 -
Vium946g00009 413 SMART c2h2final6 4 28 IPR013087 -
Vium946g00009 413 MobiDBLite consensus disorder prediction 130 146 - -
Vium946g00009 413 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Vium946g00009 413 MobiDBLite consensus disorder prediction 165 179 - -
Vium946g00009 413 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Vium946g00009 413 Pfam C2H2 type zinc-finger (2 copies) 188 289 IPR041661 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium946g00009 1 413 C2H2 Transcription Factor Family AT4G31420 66.667 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium946g00009 zf-C2H2_2 7.7e-25 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium946g00009 K14816 - gmx:100796317 697.967