Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9467g00003 ATGGGAAGGATGCCATGTTGTGAGAAGGTAGGGTTGAAGAAAGGACGATGGACTCCAGAAGAAGACAGGAAGCTCCTCGACTACGTTCGGAATCATGGTCATGGAAACTGGCGTTCAGTGCCTGCCAAAGCGGGTCTTCAAAGATGTGGAAAGAGTTGCAGATTGAGGTGGATTAACTATCTCAAACCTGATATCAAAAGAGGAAACTTCAGCGCCGAGGAAGACCACTCAATCATTCAACTTCATGCTCTTCTTGGAAACAGATGGTCCATCATAGCAGCTCACCTTCCCCAAAGAACCGACAATGAGATCAAGAACTATTGGAATACCAAGATCAAGAAAAGACTCATCAGAATGGGCTTAGATCCCATTACCAACAAAACAATAAAAAAGAACACGTTTGAAACCAATGGTGATGGCCATGACAAAACAAAGGACACCAACAATATAAGCCACGAGGCTCAATGGGAGGGTGATCGACTTGAAGCTGAAGCCAGAGGATCTATGTTGCAACTTGGATCCTCGCAACTGTCTGGGCTCATTTTGAGAAAAATTCCAACCGAAAACAACACAGCGTATAACATGTATGCCCTCGTGCTTGCCACAAATAATGATTTTCGGTCATCTGTATCCACTTTGAGCATTCCAATGCTTCCTGGAGTTTCTAATACTCCACATATCAGGAATAAGGAAAGTTCACTTTCATATAAGAGTGATAATAGTATCATGGGAGCTAGTGGCCAAAGTCAAAAGGAAATAGAAGGTTGGGTATCAAACTTACAAGATGATATTATGGTGGCTGTGGAAGCATTCAGAACAGCAAGGTCTGAGAGTATCGACGAGCTGTTTAATGAATACACTTCCAATTAG 870 0.4276 MGRMPCCEKVGLKKGRWTPEEDRKLLDYVRNHGHGNWRSVPAKAGLQRCGKSCRLRWINYLKPDIKRGNFSAEEDHSIIQLHALLGNRWSIIAAHLPQRTDNEIKNYWNTKIKKRLIRMGLDPITNKTIKKNTFETNGDGHDKTKDTNNISHEAQWEGDRLEAEARGSMLQLGSSQLSGLILRKIPTENNTAYNMYALVLATNNDFRSSVSTLSIPMLPGVSNTPHIRNKESSLSYKSDNSIMGASGQSQKEIEGWVSNLQDDIMVAVEAFRTARSESIDELFNEYTSN 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9467g00003 289 Gene3D - 68 149 - -
Vium9467g00003 289 CDD SANT 16 61 IPR001005 -
Vium9467g00003 289 CDD SANT 69 110 IPR001005 -
Vium9467g00003 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vium9467g00003 289 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium9467g00003 289 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Vium9467g00003 289 Gene3D - 13 66 - -
Vium9467g00003 289 SMART sant 66 114 IPR001005 -
Vium9467g00003 289 SMART sant 13 63 IPR001005 -
Vium9467g00003 289 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium9467g00003 289 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium9467g00003 289 FunFam MYB-related transcription factor 13 66 - -
Vium9467g00003 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vium9467g00003 289 FunFam MYB transcription factor 68 129 - -
Vium9467g00003 289 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 223 - -
Vium9467g00003 289 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9467g00003 Vium-Chr9467 47596 48690 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9467g00003 1 166 MYB Transcription Factor Family AT3G01140 69.277 2.04e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium9467g00003 Myb_DNA-binding 7.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9467g00003 K09422 - gmx:100790887 402.905