Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9463g00026 ATGAAGCAAAAGGATTGTTACAGAAAAGTGACAGGGAAAGTGGTGGTGGTTGCAGTTGAAGCAACGAAAGAAGTTTCAAGGAGTGGTTTGATGTGGGCTTTGACTAATGTTGTTCAACCAGGAGATTGTATTAAGCTGCTGGCTGTCATTCCGCCTTTCTGTTCAAACATCAGGTCATTGGGTCTCTCTGGGCTTGCTTTTGCTACTGATTGTATCACTGCTCAGTGGAGATCCCGTTTAGGAACTGTCTCAGATCAAAAAGAAGTTTTTGTGAATTCATGCTCCCAAATGGTGCTTCAACTTCATCAGTTTTATGATCCAGAGAAGATAAAGATCAGAATCAAAATTCTTTCTGGTTCTTTTTGTGGAGCAGTGGCTGCTGAAGCCAAGAGAGCCAAATCAAGCTGGGTGATATTGGACAGAAAATTGAAAAATGAAAAGAAATACTGCATGGAGGAGCTGAATTGCAGTGTTGTAATCATGGAGCGATCTGGGCCAAACGTTCTGCGATTGAATTTGATCCTTTCAACAAATATGGAGCACAATGCATTTCCAAGAAACTTCAAAGGCAAATCTGAACATGCAAATACAATTAAGTGTCCAATTGTTACTCCTGGAAGTAGTCTTAAACAAGGATCAAAGACTGCTAGTATCATTGGAACACCATCAACACCTTGGACTTGGACTTCACCATTTTATCAATATGGTAATGATGGAGGACGAAGAAAAGATTTACCCTTTTCTCAGAACGAGGTGAAAAATGTGGAGGAAGGTGTATCCAATTCAGAGAGTGAAATTATTATGAGTTTGTCATCCTGCGGGTCATATTTCCAGCCATGGATTTCAAATGCAATTTGTGGTGATGAAGAGTTTTCGAAAAACATTAACATTAACGAGGCTCTGGTTCATAAATTGGATCACGATCCTGTGTTAGGAGTGCTTAATTGTAAAATTGATGTGAACATAAGCAGAAGTGTCAGAGAAGCAATTTCACTAGGCAGAAATGGCACTACTGCGTCACTCCCATTGTGCTCTATTTGTCAGCATAAGGCACCTTTGTTTGGGAATCCTCCAAGATGGTTTACATTTGCTGAACTGAAACTTGCCACTGCTGGATTTTCACAGGAAAATCTTTTGGCAGAAAATGAGGTTGGATCTGTACACCGTGGAGTCCTATCTGATGGGCAGGTTGTTGCTATCAAGCAGTGTAAATTAGCTGCTACTCAAGATGATGAAGAATTTTCTGCACAGGTTCAGGTCTTAAGCTGCACACAACATCGTAATGTTGTGATGCTAATTGGGTTTTGCTTGGAGTATGGAAGAAAAATTCTGGTTTATGAATATATCTGCAATGGATCTCTATATTCTCATCTTCATGAAAAGAATGAAAATGTACTGAATTGGTCTGCACGCAAGAAAATTGCTCTGGGAGTAGCTCGTGGGTTGAGATACCTTCATGAAGAGTGTAGAGTGGGTTGTATTGTGCACGGCGACATTAGACCCTGCAATATCTTCCTTACTCATGACTTTGAGCCATTGGTATGTCTAAACTTTAATATGAAAATGCATAGGTATTTGGCTCCAGAATATACTGAAAGTGGTGACATCACTGAAAAAGCCGATGTGTACTCGTTCGGGGTGCTATTACTGGAGCTTCTTACTGGACGCAAAGCTTTGGATAGAAGCCACCAATGCCTCCATGAATGGGGTTTGGTTGAGCGAGGTGACATTGATGAAGTTGTAGACCCAAACATAAGAAACTGCATCATTGATGAGGAACTTCATCGCATGCTGCAATGTTCCACTCTCTGCATCCAACACCATCCTCGTTTAAGGCCACCCATGTCTCAGGTACTCCAGATTTTAGAAGGTTATGTTTTGCAAAGTTGA 1890 0.409 MKQKDCYRKVTGKVVVVAVEATKEVSRSGLMWALTNVVQPGDCIKLLAVIPPFCSNIRSLGLSGLAFATDCITAQWRSRLGTVSDQKEVFVNSCSQMVLQLHQFYDPEKIKIRIKILSGSFCGAVAAEAKRAKSSWVILDRKLKNEKKYCMEELNCSVVIMERSGPNVLRLNLILSTNMEHNAFPRNFKGKSEHANTIKCPIVTPGSSLKQGSKTASIIGTPSTPWTWTSPFYQYGNDGGRRKDLPFSQNEVKNVEEGVSNSESEIIMSLSSCGSYFQPWISNAICGDEEFSKNININEALVHKLDHDPVLGVLNCKIDVNISRSVREAISLGRNGTTASLPLCSICQHKAPLFGNPPRWFTFAELKLATAGFSQENLLAENEVGSVHRGVLSDGQVVAIKQCKLAATQDDEEFSAQVQVLSCTQHRNVVMLIGFCLEYGRKILVYEYICNGSLYSHLHEKNENVLNWSARKKIALGVARGLRYLHEECRVGCIVHGDIRPCNIFLTHDFEPLVCLNFNMKMHRYLAPEYTESGDITEKADVYSFGVLLLELLTGRKALDRSHQCLHEWGLVERGDIDEVVDPNIRNCIIDEELHRMLQCSTLCIQHHPRLRPPMSQVLQILEGYVLQS 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9463g00026 629 Gene3D Phosphorylase Kinase; domain 1 342 448 - -
Vium9463g00026 629 SUPERFAMILY Protein kinase-like (PK-like) 353 623 IPR011009 -
Vium9463g00026 629 ProSitePatterns Tyrosine protein kinases specific active-site signature. 494 506 IPR008266 GO:0004672|GO:0006468
Vium9463g00026 629 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 345 448 - -
Vium9463g00026 629 ProSiteProfiles Protein kinase domain profile. 373 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9463g00026 629 Gene3D Transferase(Phosphotransferase) domain 1 449 628 - -
Vium9463g00026 629 Pfam Protein kinase domain 381 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9463g00026 629 PANTHER OS01G0750732 PROTEIN 245 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9463g00026 Vium-Chr9463 91252 96582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9463g00026 360 623 Trihelix Transcription Factor Family AT5G38560 41.581 2.05e-72 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vium9463g00026 PK_Tyr_Ser-Thr 8.6e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9463g00026 - - vun:114182477 1003.82