Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9455g00004 ATGGAAAACCACATCTACTCCTCCTACAGCCCGTCCACCAACTACCGATTTCGCGACTCCGACTCCTCAACCATGTTCCTCTCCCACCACCACCGTGCCGCCGACTCCGCCGCCCTCCGCTTCTCCTCCTCCCTCGCCGACGACATTGCCCCGCCAGGTGTTACCTCCCGCATCGCCTCTTCCGCCGCCGCCAACTACCTCTCCCCCTGGGCCTCCTCCGCCGCCACCTCCTCCCTCGACTTCAAACGCTCCTCTGACGCTCTCTACCATCCAACCATTTTGGGTACTATTGGGCAAAGTGAAGCTTGGTATTCTACAAACTCACTGGCCAAGCGCCCTAGATATGAAAGTGCTTCCAATATGACTATATATCCACAGAGGCCAGGAGAAAAAGATTGTGCCCACTATATGCTCACAAGAACCTGTAAGTTTGGAGATAGCTGCAAGTTTGACCATCCTGTTTGGGTTCCTGAGGGTGGAATCCCGGATTGGAAAGAGGTTCCAAATGTTGTTACAAGTGAAACTCCTCCTGAGAGACCAGGGGAACCAGATTGTCCATACTTTCTGAAAACTCAGAGATGCAAGTTTGGTTCAAAGTGCAAATTTAATCATCCTAAAGTTTCCTCTGAAAATGATGATGTATCTTCTGGCTTACCTGAGAGGCCATCAGAGCCCCCTTGCTCGTTCTACATGAAAACTGGAAAATGTAAATTTGGTGCTTCTTGTAAATTCCATCACCCCAAGGATATCCAGATTCAGTCGTCTGATGAGTTGAGTCATACTCAGACAGAAATAAATTCTATGATAGGAGGTTCACTTGGAGATACACAACCAATTAAGTCTCTAATATCTCCATCATTGCAAAATAGCAAAGGACTTCCAGTTAGACTGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGCAGTTGCAAGTACGGTGCCACTTGCCGCTACAATCATCCGGACAGGAATGCAATTAATCCACCCATTGCTGGATTAGGCGCTTCTATTTTGCCATCCTCAGCTGCTAGTCTGAATATTGGACTTCTTAGTCCAGCTGTGTCTGTTTATCAAGCTTTTGACCCAAGGCTGTCAAATCCAATGTCTCAGGTGGGAATTGCAGAATCCATCTATCCTCAACGACCTGGCCAGATCGAATGTGATTTTTACATGAAAACTGGCGACTGTAAATTCGGTGAAAGATGCAAGTATCATCACCCAATTGATCGCTCAGCACCATCACTGTCAAAGCAGGCTTCTGTCAAGCTCACTCCTGCAGGACTACCAAGAAGAGAGGGTGCGGTTATTTGTCCATATTATTTGAAAACTGGAACATGCAAGTTTGGTGCGACCTGCAAGTTTGACCACCCACCACCTGGAGAAGTTGTGGAGATGGCAAAATCTCAAGGAACATCAGCCGATGGAGGGGAAGCAGAAGACTGA 1446 0.4779 MENHIYSSYSPSTNYRFRDSDSSTMFLSHHHRAADSAALRFSSSLADDIAPPGVTSRIASSAAANYLSPWASSAATSSLDFKRSSDALYHPTILGTIGQSEAWYSTNSLAKRPRYESASNMTIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGGIPDWKEVPNVVTSETPPERPGEPDCPYFLKTQRCKFGSKCKFNHPKVSSENDDVSSGLPERPSEPPCSFYMKTGKCKFGASCKFHHPKDIQIQSSDELSHTQTEINSMIGGSLGDTQPIKSLISPSLQNSKGLPVRLGEVDCPFYMKTGSCKYGATCRYNHPDRNAINPPIAGLGASILPSSAASLNIGLLSPAVSVYQAFDPRLSNPMSQVGIAESIYPQRPGQIECDFYMKTGDCKFGERCKYHHPIDRSAPSLSKQASVKLTPAGLPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVVEMAKSQGTSADGGEAED 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9455g00004 481 ProSiteProfiles Zinc finger C3H1-type profile. 179 207 IPR000571 GO:0046872
Vium9455g00004 481 FunFam zinc finger CCCH domain-containing protein 37 380 473 - -
Vium9455g00004 481 ProSiteProfiles Zinc finger C3H1-type profile. 382 410 IPR000571 GO:0046872
Vium9455g00004 481 FunFam Zinc finger CCCH domain-containing protein 37 165 212 - -
Vium9455g00004 481 FunFam Zinc finger CCCH domain-containing protein 37 86 164 - -
Vium9455g00004 481 Gene3D - 86 164 - -
Vium9455g00004 481 Gene3D - 165 213 - -
Vium9455g00004 481 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Vium9455g00004 481 SUPERFAMILY CCCH zinc finger 225 249 IPR036855 GO:0046872
Vium9455g00004 481 PANTHER PROTEIN PHOSPHATASE RELATED 284 468 - -
Vium9455g00004 481 ProSiteProfiles Zinc finger C3H1-type profile. 221 249 IPR000571 GO:0046872
Vium9455g00004 481 ProSiteProfiles Zinc finger C3H1-type profile. 432 460 IPR000571 GO:0046872
Vium9455g00004 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 224 248 IPR000571 GO:0046872
Vium9455g00004 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 436 459 IPR000571 GO:0046872
Vium9455g00004 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 153 IPR000571 GO:0046872
Vium9455g00004 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 385 408 IPR000571 GO:0046872
Vium9455g00004 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 299 322 IPR000571 GO:0046872
Vium9455g00004 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 181 206 IPR000571 GO:0046872
Vium9455g00004 481 SUPERFAMILY CCCH zinc finger 436 459 IPR036855 GO:0046872
Vium9455g00004 481 Gene3D - 380 474 - -
Vium9455g00004 481 SUPERFAMILY CCCH zinc finger 184 205 IPR036855 GO:0046872
Vium9455g00004 481 Gene3D - 218 332 - -
Vium9455g00004 481 ProSiteProfiles Zinc finger C3H1-type profile. 127 155 IPR000571 GO:0046872
Vium9455g00004 481 SUPERFAMILY CCCH zinc finger 385 410 IPR036855 GO:0046872
Vium9455g00004 481 SMART c3hfinal6 382 409 IPR000571 GO:0046872
Vium9455g00004 481 SMART c3hfinal6 432 459 IPR000571 GO:0046872
Vium9455g00004 481 SMART c3hfinal6 179 206 IPR000571 GO:0046872
Vium9455g00004 481 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Vium9455g00004 481 SMART c3hfinal6 127 154 IPR000571 GO:0046872
Vium9455g00004 481 SMART c3hfinal6 221 248 IPR000571 GO:0046872
Vium9455g00004 481 SUPERFAMILY CCCH zinc finger 300 323 IPR036855 GO:0046872
Vium9455g00004 481 SUPERFAMILY CCCH zinc finger 127 154 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9455g00004 Vium-Chr9455 120019 133287 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9455g00004 281 474 C2H2 Transcription Factor Family AT3G02830 34.359 7.29e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium9455g00004 zf-CCCH 1.5e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9455g00004 - - pvu:PHAVU_011G180700g 969.918