Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9455g00002 ATGGCCGGTGTTGCAGGCATGACTACTGGTGAAGGGGCACCACTTTTGGCTCTTAAACTATCATCTGCTCTTTTGTTTTCTGCAGCCCCCGGGATGCTACTTGCTACCAACAAAATCCAACCCTCACAACTTGCCGAGGAACAAAGAAATGCTTCAAGTGGGGGTGGGAAATGTGCGAGCTTTGGTTGGTGGGAAGGATTTGAGGTTGCTTTCGAGGTGGGAAGGGAGGACGGAGTTGGTGATCCTGACACAGTTGATGGTAGAGAGTTGGTCAACACGCATGCATCTTGGGCCAGTGAAGGTGATCCCACCGACAATGCTGCTGAAGGTAGCCGTACCGAGAAGCCTCTCCCCGTGCAGATTCTCGAGATGAATCAGGCTTATGCAAATTCATCAAATAATTTAGAAAGTCATGTCCACAAAGCAAATCAATATACTACTAATCATGCTTTCATGAGTGACTACAAAACCACTACTAAGCACACCACTCCAAGTGCAAGAATGTCTTCAAACGACAACCCTTCAACAAGATCACCAAGAGCAATAGCAGAAGCTGCAAGAAATTTTAATGTACCTACAAAAAAAAGCATTCTAGGTGACCATAGAAGTGGCAGTAGTTCTCGTAGTGATAGTTTGGAGAGCATTTGCAGTGCACATATTAAGCCTCATACTGGAGGTGATGTGAGGTGGGATGCAATTAACATGGTTTCTAAGGGTAATGGTCTTGATCTCAGTCATTTCAAGCTTCTAAAGCGTGTTGGATATGGTGATATTGGAAGTGTGTACCTTGTAGAACTTAAAGGAACCAAAGCATTCTTTGCCATGAAAGTAATGGATAAGGCAGCACTTGCTAGTAGAAACAAGCTTTTGAGGGCACAGACAGAAAGAGAGATTCTTGGACTTCTTGATCACCCTTTTCTGCCAACTTTATATTCTTATTTTGAGACTGATAAATACTATTGTCTGGTCATGGAGTTTTGTAGCAGTGGTAGTTTGCATTCTCTTCGAATGAAACAACCTAACAAGCATTTCACTGAAGAAGCTACACGGTTTTATTGTTCAGAAATTTTGTTAGCCTTGGAATACTTGCACATGTTAGGCATTGTGTATAGAGACTTAAAACCAGAAAATGTTCTAGTTCGAGATAAAGGTCACATAATGTTATCAGATTTTGACTTATCTCTTCGGTGCTCTGTGAATCCTACACTAGTGAAGTCCTCATCTACACATGAAAGTAGTAATGGTCCTTCTGGAGGCATTCTAAGTCATGATCAAACAATACATGGTTGCATGCAGCACTCAAGTTTCTTTCCACGGATTTTGCCTTCAAAAAAGAATCGCAAGACAAAGTCTGATTTTGGCCTTGTGGTTGGAGGATGCCTCCCTGAACTAATGGCTGAGCCTACAAATGTGAGGTCAATGTCCTTTGTAGGGACACATGAGTATCTTGCACCAGAGATTATTCGTGGTGAAGGACATGGTAGTGCAGTGGATTGGTGGACCTTTGGAATCTTCTTGTATGAGCTTTTGCATGGGATAACACCCTTTAAAGGTGCTGGAAACAAAGCTACCCTTTTCAATGTTGTAGGACAGCCCTTAAGGTTTCCAGAAAAACCAGTTGTTAGCAAAGTTGCAAGAGACCTTATAGAAGGGTTGTTGGTGAAAGAGCCTAAAAAAAGATTTGCTTACTACAGAGGTGCCACAGAAATAAAGCAACATCCTTTCTTCCATGGAGTGAATTGGGCTCTTGTTAGAAGTGCTACACCTCCTATTATACCAGAATCTTTTGATTTTTCTAAGTACGATAGAAAAACAGATGTTCCACCAATGGATAAGAAGGTTACAGATATTATTGCAAGTGATAAAAGCAATCATACACAACCAGATTCATCTTATGAAAATTTTGAGTACTTTTAA 1917 0.4137 MAGVAGMTTGEGAPLLALKLSSALLFSAAPGMLLATNKIQPSQLAEEQRNASSGGGKCASFGWWEGFEVAFEVGREDGVGDPDTVDGRELVNTHASWASEGDPTDNAAEGSRTEKPLPVQILEMNQAYANSSNNLESHVHKANQYTTNHAFMSDYKTTTKHTTPSARMSSNDNPSTRSPRAIAEAARNFNVPTKKSILGDHRSGSSSRSDSLESICSAHIKPHTGGDVRWDAINMVSKGNGLDLSHFKLLKRVGYGDIGSVYLVELKGTKAFFAMKVMDKAALASRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKYYCLVMEFCSSGSLHSLRMKQPNKHFTEEATRFYCSEILLALEYLHMLGIVYRDLKPENVLVRDKGHIMLSDFDLSLRCSVNPTLVKSSSTHESSNGPSGGILSHDQTIHGCMQHSSFFPRILPSKKNRKTKSDFGLVVGGCLPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFLYELLHGITPFKGAGNKATLFNVVGQPLRFPEKPVVSKVARDLIEGLLVKEPKKRFAYYRGATEIKQHPFFHGVNWALVRSATPPIIPESFDFSKYDRKTDVPPMDKKVTDIIASDKSNHTQPDSSYENFEYF 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9455g00002 638 MobiDBLite consensus disorder prediction 618 638 - -
Vium9455g00002 638 MobiDBLite consensus disorder prediction 94 113 - -
Vium9455g00002 638 SUPERFAMILY Protein kinase-like (PK-like) 244 605 IPR011009 -
Vium9455g00002 638 ProSiteProfiles AGC-kinase C-terminal domain profile. 577 638 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium9455g00002 638 MobiDBLite consensus disorder prediction 620 638 - -
Vium9455g00002 638 FunFam Serine/threonine-protein kinase AGC1-7 469 594 - -
Vium9455g00002 638 Pfam Petal formation-expressed 1 52 IPR027949 -
Vium9455g00002 638 MobiDBLite consensus disorder prediction 158 178 - -
Vium9455g00002 638 ProSiteProfiles Protein kinase domain profile. 247 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9455g00002 638 PANTHER FLIPPASE KINASE 1-RELATED 129 601 - -
Vium9455g00002 638 FunFam Serine/threonine-protein kinase D6PK-like 245 330 - -
Vium9455g00002 638 CDD STKc_phototropin_like 245 594 - -
Vium9455g00002 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 368 380 IPR008271 GO:0004672|GO:0006468
Vium9455g00002 638 Gene3D Transferase(Phosphotransferase) domain 1 452 594 - -
Vium9455g00002 638 Gene3D Phosphorylase Kinase; domain 1 245 330 - -
Vium9455g00002 638 MobiDBLite consensus disorder prediction 158 179 - -
Vium9455g00002 638 FunFam serine/threonine-protein kinase D6PK-like 331 398 - -
Vium9455g00002 638 SMART serkin_6 247 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9455g00002 638 Gene3D Transferase(Phosphotransferase) domain 1 331 401 - -
Vium9455g00002 638 Pfam Protein kinase domain 469 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9455g00002 638 Pfam Protein kinase domain 248 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9455g00002 Vium-Chr9455 83344 88181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9455g00002 212 604 AGC Kinase Gene Family AT1G79250 75.940 0.0 628
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium9455g00002 Pkinase 1.3e-36 CL0016