Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium944g00006 ATGGTGCCACGTTTTATGCATGCGCCTTCTCCGGGTTTGTCTTCTTCTCCCGGGCCTCCTCTTCTGGGCTCGGGCTCGGTTGGGCAGAAAAGAGCGCGTGAAGGTGACACTGCTGCTGCCGCGAGTGGGGGTGAGGGTGGTTCGTCACGGAGTGCGTCACAGGAAGAAAGCGGCGAGAGGAGGAGGAGATACAGAGGGGTGAGGCAGAGGCCGTGGGGGAAGTGGGCGGCGGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGCACCTTCGACACCGCCGAGGCTGCTGCCAGAGCCTACGATGAGGCCGCATTGAGGTTCAGAGGTAACAGAGCCAAACTCAACTTCCCCGAAAACGTTACCGCGGTTCGACCTCCTCACCTTCCCGATTTTCCGGCCACCTCACTCTCGGGCTCCGGTGATGTTCCAGCGGTGACTGGTTATTCTCCGACGGTGATGCAGGGGGCACCGCTTCAGAGTTCCCCTGATTTGCTTAGAGACTATTGGGGTTATTCTCAGCTTCTGCGGAGCACGGGGGAGTTCCATGGACTCGATCAGTGGTTCTATGATTCGCAAATGGCAGCGCTTCAATCCTCTTCATCGTCATTGTTGCCGCTACCGCCTGCGTATGCACCATCCTCTGCTTCCTTTCCTCTGTTTTCAAGCCAGCAAATGGGAGTTTTCCGGCCGCCGGGGCAACAGCATCACGGCGGAGGGGACAGTGGTAGCGGGTCAGAGTTTCCACCTTCGTCATGGTCAGATACGAGTAGTTATCCTCCTCCACCTCCACCACCCGGTTGA 810 0.5852 MVPRFMHAPSPGLSSSPGPPLLGSGSVGQKRAREGDTAAAASGGEGGSSRSASQEESGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVTAVRPPHLPDFPATSLSGSGDVPAVTGYSPTVMQGAPLQSSPDLLRDYWGYSQLLRSTGEFHGLDQWFYDSQMAALQSSSSSLLPLPPAYAPSSASFPLFSSQQMGVFRPPGQQHHGGGDSGSGSEFPPSSWSDTSSYPPPPPPPG 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium944g00006 269 SUPERFAMILY DNA-binding domain 63 121 IPR016177 GO:0003677
Vium944g00006 269 CDD AP2 71 122 IPR001471 GO:0003700|GO:0006355
Vium944g00006 269 ProSiteProfiles AP2/ERF domain profile. 63 120 IPR001471 GO:0003700|GO:0006355
Vium944g00006 269 Pfam AP2 domain 63 112 IPR001471 GO:0003700|GO:0006355
Vium944g00006 269 Gene3D AP2/ERF domain 62 122 IPR036955 GO:0003700|GO:0006355
Vium944g00006 269 SMART rav1_2 63 126 IPR001471 GO:0003700|GO:0006355
Vium944g00006 269 MobiDBLite consensus disorder prediction 241 256 - -
Vium944g00006 269 MobiDBLite consensus disorder prediction 227 269 - -
Vium944g00006 269 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Vium944g00006 269 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Vium944g00006 269 MobiDBLite consensus disorder prediction 1 67 - -
Vium944g00006 269 PANTHER DNA-BINDING DOMAIN 48 160 IPR044808 GO:0003700|GO:0009873
Vium944g00006 269 FunFam Ethylene-responsive transcription factor 2 62 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium944g00006 Vium-Chr944 32618 34848 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium944g00006 54 138 AP2-EREBP Transcription Factor Family AT2G33710 72.941 3.20e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium944g00006 AP2 4.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium944g00006 - - gmx:100777915 247.669