Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9434g00004 ATGGCTGCAGCTTTAGAGTGCTGGTCCAGCCGCGCCACCTCCGCCGCCGACGATGACACGGTGGAGCAGGTTCTCATGCGTACCCATCACAGATCTGAAGGCCCGGCTTCCACCCCTAAAGACCCCTCCTCCATCCCCAACGTCCACAAGAAGTTCCAGAAGCTCACCCGCAACGTCTCCGAAGCCATAGCCTCATTCAGAAATTCGCTAAACCTCGATTCACCTCCTTCCTCCAAAGCTGATGCCTCTTCGCGGAAACTTGCCTGGGGAAGTGTCGTTCGCAACCTCACTCAGCTCTACCCCGGAAGCCAACTCCCCGAGAAACTTATGTCCAACATTCGCAAGCATTATGATTCCTTGCCCCTCAGTTATGCACAGGCTGAGTTTGATATGAAGGACGTGTTTCTTCACATAAAGTTGATGGAGCAAGCTTCGGAGACCGACCAGCCTGCGATTTTGATTCAAGAAGATTGTGATGACGAGGTTCAAGGTTCTGCTCTGAAGCTCACGTTTGCTTGCAACTCTCCGATTTCCTGGCCTGCGATGTCAGGGGCATTGGATAGTTCCTCCATTTGCTGCAAGAGGATGCAGATCTTTGAGAAGAAGGGTTTCACCTTGGGAGTTGTGCTTCTTGTGGTTCAGTCTGGGCATGATAAGTTGGTGAGGACCAGGGTTGAAAATGCTTTAAAGTTTGCAATGAAGAAGCCTAAAACTGGTGCTGTGAAGCTCCCCTTCGGGCTCTGTGGGTGCCAGGAGGAAAATTCTAAAGGGAGAGATCTTGTGGAGATTGAAGAAGAATACGGTGATGGTTACCGTGGAAAGGAGTTTGAGAATTCAAGTCAAAGGATTCAGCTTCAGGTGCCTTTGCCTTCTTCATCTTTCGTTGTGTCAGTGGATGAATGGCAGACCATACAGTCAGGTGGGGATGAGATTGAGAAATGGTTGTTGAACTCAGATAGCGTGGAGTTTGTTGAGCAGATTGGGCCAAATTCGTACAAGGGTGTTTATATGGGGAAGAGGGTTGGGATTGAGAAGCTGAAGGGGTGTGATAAAGGGAATTCTTACGAGTTTGAGCTCCACAAGGATCTGCTGGAACTCATGACTTGTGGTCATAGGAACATTCTGCATTTCTGCGGTATTTGCGTGGATGATAATCATGGGCTGTGTGTGGTGACCAAGTTCATGGAAGGTGGATCTGTTCATGACCTGATGTTGAAGAACAAGAAGCTGCAGAATAAGGATATTGTGAGGATTGCAGTTGATGTGGCAGAAGGGATCAAGTTTATGAATGACCACGGTGTTGCATATAGAGACCTTAATACACAGAGAATTCTGTTGGATAGGCATGGGAATGCTTGCTTGGGAGATATGGGTATAGTCACTGCCTGCAAAAGTGTTGGAGAAGCTATGGAGTATGAAACTGATGGTTATAGGTGGCTAGCTCCTGAGATAATAGCAGGGGACCCAGAGAATGTGACAGAGTCATGGATGAGTAATGTGTATAGTTTTGGGATGGTAATTTGGGAAATGGTAACTGGTGAGGCAGCATACTCTTCATTTTCACCTGTTCAAGCAGCAGTGGGCATTGCTGCCTGTGGCCTTAGACCAGAAATCCCAAAAGACTGCCAACAAACTCTAAAATACATTATGACAAAATGCTGGAACAACGCCCCTTCCAAACGCCCTCAGTTCTCTGAAATCTTAGCCATATTGCTGCGACCAAACTGCAACAACAGATAA 1740 0.4764 MAAALECWSSRATSAADDDTVEQVLMRTHHRSEGPASTPKDPSSIPNVHKKFQKLTRNVSEAIASFRNSLNLDSPPSSKADASSRKLAWGSVVRNLTQLYPGSQLPEKLMSNIRKHYDSLPLSYAQAEFDMKDVFLHIKLMEQASETDQPAILIQEDCDDEVQGSALKLTFACNSPISWPAMSGALDSSSICCKRMQIFEKKGFTLGVVLLVVQSGHDKLVRTRVENALKFAMKKPKTGAVKLPFGLCGCQEENSKGRDLVEIEEEYGDGYRGKEFENSSQRIQLQVPLPSSSFVVSVDEWQTIQSGGDEIEKWLLNSDSVEFVEQIGPNSYKGVYMGKRVGIEKLKGCDKGNSYEFELHKDLLELMTCGHRNILHFCGICVDDNHGLCVVTKFMEGGSVHDLMLKNKKLQNKDIVRIAVDVAEGIKFMNDHGVAYRDLNTQRILLDRHGNACLGDMGIVTACKSVGEAMEYETDGYRWLAPEIIAGDPENVTESWMSNVYSFGMVIWEMVTGEAAYSSFSPVQAAVGIAACGLRPEIPKDCQQTLKYIMTKCWNNAPSKRPQFSEILAILLRPNCNNR 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9434g00004 579 MobiDBLite consensus disorder prediction 1 20 - -
Vium9434g00004 579 SUPERFAMILY Protein kinase-like (PK-like) 299 571 IPR011009 -
Vium9434g00004 579 Gene3D Transferase(Phosphotransferase) domain 1 314 574 - -
Vium9434g00004 579 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 90 571 - -
Vium9434g00004 579 PRINTS Tyrosine kinase catalytic domain signature 392 405 IPR001245 GO:0004672|GO:0006468
Vium9434g00004 579 PRINTS Tyrosine kinase catalytic domain signature 498 520 IPR001245 GO:0004672|GO:0006468
Vium9434g00004 579 PRINTS Tyrosine kinase catalytic domain signature 542 564 IPR001245 GO:0004672|GO:0006468
Vium9434g00004 579 PRINTS Tyrosine kinase catalytic domain signature 428 446 IPR001245 GO:0004672|GO:0006468
Vium9434g00004 579 Pfam Protein tyrosine and serine/threonine kinase 356 570 IPR001245 GO:0004672|GO:0006468
Vium9434g00004 579 ProSiteProfiles Protein kinase domain profile. 321 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9434g00004 579 MobiDBLite consensus disorder prediction 26 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9434g00004 Vium-Chr9434 37785 42459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9434g00004 304 571 MAP Kinase Kinase Kinase AT2G17700 33.091 4.04e-51 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-7 Vium9434g00004 PK_Tyr_Ser-Thr 3.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9434g00004 - - pvu:PHAVU_008G258400g 1129.39