Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium942g00004 ATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGCGCTTTTGGTTCTGCGCTTCTTGTGAGACATAAGCATGAAAAGAAAAAATATGTGTTGAAGAAGATTCGCCTTGCACGTCAAACCGAGCGCTCTCGCAGATCTGCACATCTGGAGATGGAGCTCATCTCTAAATTAAGAAACCAATTCATTGTGGAGTACAAAGATTCGTGGGTAGAAAAGGGTTGCTATGTCTGCATCATTATAGGTTATTGCGAGGGAGGAGATATGGCGGAAGCTATAAAGAAAGCTAATGGTGTCCTGTTTCCTGAGGAGAAACTTTGTAAGTGGCTCGTTCAACTTCTTATGGCTCTTGAGTACTTGCACATGAACCACATTCTTCACCGTGATGTCAAGTGTTCAAATATCTTCTTGACAAAAGATCGTGACATACGGCTCGGTGATTTTGGACTTGCCAAAATGTTGACGTCTGATGATCTCGCTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGCTGTATATATGAAATGACAGCGCATAAGCCTGCATTCAAAGCATTTGATATACAGGCATTGATTAACAAGATTAATAAATCAATAGTGGCTCCACTGCCTACAAAATATTCTAGTTCGTTTCGAGGTCTTGTTAAAAGTATGCTGCGCAAGAATCCAGAGCTTAGGCCAAGTGCTACAGAGCTGCTTGGACATCCACATCTTCAATCTTACGTTCTTAAGGTCCATCTCAAAATCAATAGCCCCAGGCGAAACACATTGCCAGTTCATTGGCCAGAATCCAATTACTTGAAGAAAACTAGATTTTTGGTGCCAGAAGATGACCCTGTTTCTCTGTATAGGGATAAGCGACATTCTTTCAGTAATGATCGGACTCTGAACCCTAGTGTATCTGGAGCTGATCAAGATTCTTTGTGCTCTACTCTTGAAATAGATTGTACTCCTGACCATTTGAATCAAAGATTAGCAGAACTACGTGTTGGAGATAGCCATGAATTGAAATCAATCCGGAAGCCTGCTGTTTCCAGAACTTCTAGCATTGCTAAGACTCCAAGATTCACTTCCTCAAAAGTCTCTGGCACCAACAAGAAAACAATGAAATCCTCAAAGAATCATAAAGAGATGCCTCCTTCACACAGTACAACAAAATCTGCTAATACTAACCGTAGAGCATCATTTCCATTGCCAAAAAGAGGTGGTATTCGACAGCCTCCTTCCGGGCCCAATGCCACTATGATTAGTCACGTGTCTTCACCTGATATCTCAGTCAATTCTCCACGAATTGATAAGATGGCTGAATTCCCATTAACTTCATATGTGGATTCTTTGTTTCCCATCAATAGAACATCATCCTTTGTTCAATGTTCCTCTGGCCTCCCATCCAGCGGCAACCATTCCACTGTGATAGACAAATGCACGGTAGAGGTACATGATATGGCCTCAAACAGTCCCGACTGTACTGAGTCTTGGCAGGGAATCAAGCAGAGCGTTTTAAAGGAAATTGATGAGGATAAAAGTGGTTCCTCTGATCAAAATGCAACGGCAGGTGCTTCAAGCCACACATCTTCTGACTTGCGCCGTAGACAATTTGACCCGTCATCATTCCAACAAAGGACTGAAGCTTTAGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTACAGCAGGCGAGATATGATGAACTTGGGGTTCTATTGAAACCATTTGGGCCTGGAAAGGTTTCCCCAAGGGAAACAGCTATCTGGTTGAGTAAGAGCTTCAAAGAGAATACTTTCAACCCAGAAGAATCCATGTAA 1863 0.4235 MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHLEMELISKLRNQFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFPEEKLCKWLVQLLMALEYLHMNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTAHKPAFKAFDIQALINKINKSIVAPLPTKYSSSFRGLVKSMLRKNPELRPSATELLGHPHLQSYVLKVHLKINSPRRNTLPVHWPESNYLKKTRFLVPEDDPVSLYRDKRHSFSNDRTLNPSVSGADQDSLCSTLEIDCTPDHLNQRLAELRVGDSHELKSIRKPAVSRTSSIAKTPRFTSSKVSGTNKKTMKSSKNHKEMPPSHSTTKSANTNRRASFPLPKRGGIRQPPSGPNATMISHVSSPDISVNSPRIDKMAEFPLTSYVDSLFPINRTSSFVQCSSGLPSSGNHSTVIDKCTVEVHDMASNSPDCTESWQGIKQSVLKEIDEDKSGSSDQNATAGASSHTSSDLRRRQFDPSSFQQRTEALEGLLEFSARLLQQARYDELGVLLKPFGPGKVSPRETAIWLSKSFKENTFNPEESM 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium942g00004 620 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium942g00004 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vium942g00004 620 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium942g00004 620 MobiDBLite consensus disorder prediction 524 557 - -
Vium942g00004 620 MobiDBLite consensus disorder prediction 531 546 - -
Vium942g00004 620 MobiDBLite consensus disorder prediction 359 432 - -
Vium942g00004 620 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Vium942g00004 620 SUPERFAMILY Protein kinase-like (PK-like) 1 302 IPR011009 -
Vium942g00004 620 Gene3D Transferase(Phosphotransferase) domain 1 84 274 - -
Vium942g00004 620 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vium942g00004 620 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Vium942g00004 620 MobiDBLite consensus disorder prediction 362 388 - -
Vium942g00004 620 CDD STKc_Nek 3 258 - -
Vium942g00004 620 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Vium942g00004 620 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 570 - -
Vium942g00004 620 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium942g00004 Vium-Chr942 34086 42410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium942g00004 10 260 MAP Kinase Kinase Kinase AT1G53570 31.250 2.53e-35 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vium942g00004 Pkinase 8.7e-64 CL0016