Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium942g00001 ATGAATAATATTGTGAATAAACCTCAAGAGATGAGACAGCTAACGCCATCAGCTTATAACTGCTTCATCAAAGAAGAGATTAACAGGCTAAAGGCTGAGAGCCCTGACATGGCTCACAAAGAAGCTTTTAGTACAGCTGCAAAAATTGCAAAGGAGATGATCAAGAGAATTGCCAGACATATCAACTTGTGGATCTTGACTCCCAAGTGGACCCTCCTAATGTTGAGGTAA 231 0.4069 MNNIVNKPQEMRQLTPSAYNCFIKEEINRLKAESPDMAHKEAFSTAAKIAKEMIKRIARHINLWILTPKWTLLMLR 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium942g00001 76 PANTHER PROTEIN YABBY 6-RELATED 3 51 IPR006780 GO:0007275
Vium942g00001 76 SUPERFAMILY HMG-box 7 48 IPR036910 -
Vium942g00001 76 Pfam YABBY protein 3 48 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium942g00001 Vium-Chr942 7392 8395 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium942g00001 4 48 C2C2-YABBY Transcription Factor Family AT1G23420 77.778 2.04e-18 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vium942g00001 YABBY 6.6e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium942g00001 K25796 - vum:124824240 156.377