Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9424g00002 ATGGAAATCGTGGAAAAGAGAAAATTTTCTATACTGTTGTCAGAGCTGATAGTTTTGGCCGATGAGGTTGCTTCTCTTGCTAAGAACTCTGAAATTGAGGTACATATTTTTTCTGAGTTTGCCATGTTGGTTGAGAAATTCTCACCAATCTTCAATGACTTGAGAGACAAAAACACAGTTTTGGACAAGCCACCTATAAGAAAATCCTTGGAATCTCTTGAGAATGAGCTGAGGCGTGCCAAAGCTTTGACAAAAAGCTCGAATTTGAGGCAACCCATCAAGCAAATTGAGGACATAACACATGACATAGGTCGATCCTTTGGCCTTCTGCTCGTAGCCAGCCTAGAAATTTCCGTGGATTTCAGAGAAAAGATTGGTACATTGCAAAGACAGTTGATGAATGTGAGATTTGATGGCAGTTTAAGTGTAGCTTCAAGTCCAAAATCAGAGGTTTCCGGCAGTGAAGTGAAGCTGACTGCAGAAATAGAAGAGGAGATAGTTAATGTTTCTATTGCTGATGTTGTTTTGCAACTTAAGAATGGTAATGATGAAGAATTTGCAGTTTCACTTTTGAGACTGAAGGAGTTCATAGATAGTGAAAGATTTGATGGTGGTTTGATCAACGAGGAAGCAACTCTTTCCATTCTTTTCAACCGTCTAGGCTCGTGTAAGGCAGACAACAGGTTGGCAATCATGCGGTTGCTAAGAAGTATTGCTTCAGGAAATGATGAGAAAAAGGAGAAGATGGTAGATATTGATTTCTTATCAGCAGTGGTGAAGTCACTCACAAGAGATTCAGAGGAGAGGAAGGAAGCAGTAGGGCTGTTGCTAGAGCTCTCCGACATTCAGGCCGTTCGCCGGCGAATCGGAAGAATTCAAGGCTGCATTGTTATGTTAGTTGCTATCCTTAATGGGGATGACCCTGATGCCTCAAATGATGCTGCAAAGTTATTGGATATATTGTCTAGTAATTCTCAAAATGCACTTCATATGGCCGAGGCTGGCTACTTTAGGCCACTAGTGCAGTATTTGAAAGAAGGATCTGACATGAACAAGATTCTAATGGCGACAGCACTTTCAAGGTTGGAACTCCCTGATCACAGTAAGCTTTCCCTTGGAGAAGATGGGGCAATTGAGCCCCTTGTCAACATGTTCAGCACAGGGAAACTGGAGTCCAAGTTATCAGCTCTAAATGCGCTGCAAAATCTGTCAACCGTGGCAGAAAATGTGCAGCGTTTGATCAGATCAGGAATTTCAGGATCTCTGCTACAACTTCTTTTCTCAGTTACATCTGTGCTCATGACATTGCGTGAGCCTGCATCAGCCATTCTTGCAAGAATTGCTCAGTCTGAATCCATCCTTGTGAATGAAGATGTGGCTCAGCAGATGCTTTCACTTTTGAATCTTTCCAGCCCCATTATCCAGGGCCATTTGTTAGAAGCTCTAAATAACATAGCCTCCCACCCTGGTGCATCCAGAGTGAGAAGCAAAATGAAGGAAAAAGGTGCACTTCAGCTTCTCTTACCCTTTCTGAAGGAAAACACCACCAAAGTCAGGAGCAAGGTCTTGCATCTTTTGTACACTCTCTCTAAAGATCTAACAGATGAGTTAACTGAACATCTTGATGAAACTCACCTCTTAAACATAGTCAATATAGTCTCAACATCAACATCAGACAGTGAAAGAGCTGCCGCTGTTGGCATACTGAGTAATCTTCCTGCTAGTAACAAAAAGGTGACTGATATACTGCAGAGGGCAAATTTGCTGCCAATTTTAATATCCATCATGTATACTATCTCAGGAAGTAACTCATCCACAACAAATAGCTTAGCAGAGAGTATTGCCAGTGTTATCATTCGCTTCACCAATTCCTCTGACAAAAAACTACAACTTCTCTCAGCCGAACAAGGGGTGATTCCTTTGCTTGTGAAACTGCTCTCAAGCGGTTCACCAATCACAAAAGCAAGGGCTGCAGTCTCACTGGCTCAACTATCTCAGAATTCTCTGTCTCTTAGAAAGTCTAGAAAGTCAAGGTGGTTGTGTGTTCCTCCCTCGGTGAATGCATTTTGTGAAGTTCATGATGGATTTTGCTTTGTAAACAGCACATTTTGTTTGGTGAAGGCAGATGCTGTTTCTCCCCTCATCCAACTGTTGGAAGATACTGAGAGAGAAGCAGTTGAAGCTGCTTTGCATGCTCTTTCAACTCTTCTGCAAGATGAAATCTGGGAAGGTGGTGTCAGTTGCATTGCCAAGTTATCTGGTGTGCAAGCCATCATAAAAAGTCTTGAAGTTGGCGATGCAAAGGTTCAAGAAAAAGCAATATGGATGCTGGAGAGAATATTCAAAGTTGCAGAACATAGAGTTAAATATGGAGAATCTGCTCAGGTGGTTCTTATTGATCTTGCTCAAAAGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTTTTAGCTGAGCTTGAGCTCTTGCAATCTCAGTCAAGTTACTTTTAA 2493 0.4184 MEIVEKRKFSILLSELIVLADEVASLAKNSEIEVHIFSEFAMLVEKFSPIFNDLRDKNTVLDKPPIRKSLESLENELRRAKALTKSSNLRQPIKQIEDITHDIGRSFGLLLVASLEISVDFREKIGTLQRQLMNVRFDGSLSVASSPKSEVSGSEVKLTAEIEEEIVNVSIADVVLQLKNGNDEEFAVSLLRLKEFIDSERFDGGLINEEATLSILFNRLGSCKADNRLAIMRLLRSIASGNDEKKEKMVDIDFLSAVVKSLTRDSEERKEAVGLLLELSDIQAVRRRIGRIQGCIVMLVAILNGDDPDASNDAAKLLDILSSNSQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELPDHSKLSLGEDGAIEPLVNMFSTGKLESKLSALNALQNLSTVAENVQRLIRSGISGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQGHLLEALNNIASHPGASRVRSKMKEKGALQLLLPFLKENTTKVRSKVLHLLYTLSKDLTDELTEHLDETHLLNIVNIVSTSTSDSERAAAVGILSNLPASNKKVTDILQRANLLPILISIMYTISGSNSSTTNSLAESIASVIIRFTNSSDKKLQLLSAEQGVIPLLVKLLSSGSPITKARAAVSLAQLSQNSLSLRKSRKSRWLCVPPSVNAFCEVHDGFCFVNSTFCLVKADAVSPLIQLLEDTEREAVEAALHALSTLLQDEIWEGGVSCIAKLSGVQAIIKSLEVGDAKVQEKAIWMLERIFKVAEHRVKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQSQSSYF 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9424g00002 830 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 376 418 IPR000225 GO:0005515
Vium9424g00002 830 Gene3D - 695 828 IPR011989 -
Vium9424g00002 830 Coils Coil 70 90 - -
Vium9424g00002 830 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 164 830 - -
Vium9424g00002 830 SUPERFAMILY ARM repeat 166 488 IPR016024 -
Vium9424g00002 830 SUPERFAMILY ARM repeat 372 784 IPR016024 -
Vium9424g00002 830 Gene3D - 335 677 IPR011989 -
Vium9424g00002 830 Gene3D - 206 334 IPR011989 -
Vium9424g00002 830 SMART arm_5 626 666 IPR000225 GO:0005515
Vium9424g00002 830 SMART arm_5 242 281 IPR000225 GO:0005515
Vium9424g00002 830 SMART arm_5 365 405 IPR000225 GO:0005515
Vium9424g00002 830 SMART arm_5 742 782 IPR000225 GO:0005515
Vium9424g00002 830 SMART arm_5 324 364 IPR000225 GO:0005515
Vium9424g00002 830 SMART arm_5 698 738 IPR000225 GO:0005515
Vium9424g00002 830 SMART arm_5 491 531 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9424g00002 Vium-Chr9424 8298 12451 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9424g00002 215 830 U-box Gene Family AT1G76390 29.439 3.97e-49 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9424g00002 K08332 - gmx:100791453 1350.5