Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9422g00002 ATGGCTCCTTCTTTCGACACAAACACTCAAACAGTTTGCGTCATGGACGCTTCCGGCCACCTAGGTTTCACCCTCGTCCAGCGACTCCTCCAACGAGGCTACACCGTCCATGCCTCTCTCCAAAAATATGGGGATGAAGACCTACTCAATGGGATTTCCGAAGACTCTAATAAGCTCAAGGTTTTTCGATCTGACCCATTCGATTACCATAGCATAATCGAGGCACTCCGAGGCTGCTCTGGTTTGTTCTACACGTTCGAACCTCCACATGACCAACCAAATTATGACGAATACATGGCAGACGTGGAAGTAAGAGCTGCACACAACGTGTTGGAAGCCTGTGCCCAGACAGAGACAATGGATAAAGTGGTTTTTACTTCCTCAGCAACCGCAGTAGTTTGGAGAGAGGATCGCAAGACCATGGAACTGGATCTGGATGAGAGACATTGGAGTGATGTTAATTTCTGTCGCAAATTCAAGTTATGGCACGGTGTGTCGAAGACAATGGCTGAGAAAAGTGCGTGGGCCTTGGCAATGGATAGAGGAGTCAATATGGTGTCCATCAACGCTGGCTTATTGATGACTCATGATCTCACCATCCAACACCCTTACCTCAGAGGAGCTGCTGAGATGTACGAGGATGGTGTTTTCGTCACCGTTGATTTACCTTTCTTGGTGGATGCCCATATCTGCGTCTACGAAGAAGTCTCATCTTACGGTCGTTATTTGTGTTTTAATCACATCATCAACACCCAAGACGACGCCGTTCAGTTAGCTCAAAAGTTGACTTCCTCTGCTGGTTCTTCCTCGTCGTCTTCATCCTCTCCATCGCCGCAAAGTGGTGACCTCGGTAAGGGTTTTATCGAACAGAAAATTAGCAACAAGAAGTTGAACAAATTGATGGTGAACTTTGAAGCTTGA 921 0.4701 MAPSFDTNTQTVCVMDASGHLGFTLVQRLLQRGYTVHASLQKYGDEDLLNGISEDSNKLKVFRSDPFDYHSIIEALRGCSGLFYTFEPPHDQPNYDEYMADVEVRAAHNVLEACAQTETMDKVVFTSSATAVVWREDRKTMELDLDERHWSDVNFCRKFKLWHGVSKTMAEKSAWALAMDRGVNMVSINAGLLMTHDLTIQHPYLRGAAEMYEDGVFVTVDLPFLVDAHICVYEEVSSYGRYLCFNHIINTQDDAVQLAQKLTSSAGSSSSSSSSPSPQSGDLGKGFIEQKISNKKLNKLMVNFEA 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9422g00002 306 Gene3D - 4 306 - -
Vium9422g00002 306 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 262 IPR036291 -
Vium9422g00002 306 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 10 265 - -
Vium9422g00002 306 FunFam Cinnamoyl-CoA reductase-like SNL6 isoform A 4 306 - -
Vium9422g00002 306 CDD FR_SDR_e 12 302 - -
Vium9422g00002 306 MobiDBLite consensus disorder prediction 265 281 - -
Vium9422g00002 306 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 14 172 IPR002225 GO:0003854|GO:0006694|GO:0016616
Vium9422g00002 306 MobiDBLite consensus disorder prediction 265 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9422g00002 Vium-Chr9422 15147 17833 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9422g00002 10 304 Monolignol Biosynthesis Gene Families AT5G58490 30.449 6.54e-39 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9422g00002 - - pvu:PHAVU_002G140100g 566.614