Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9422g00001 ATGGCTCCTTCTTTCGACACAAACACTCAAACAGTTTGCGTCATGGACGCTTCCGGCCACCTAGGTTTCACCCTCGTCCAGCGACTCCTCCAACGAGGCTACACCGTCCATGCCTCTCTCCAAAAATATGGGGATGAAGACCTACTCAATGGGATTTCCGCAGACTCTAATAAGCTCAAGGTTTTTCGATCTGACCCATTCGATTACCATAGCATAATCGAGGCACTCCGAGGCTGCTCTGGTTTGTTCTACACGTTCGAACCTCCACATGACCAACCAAATTATGACGAATACATGGCAGACGTGGAAGTAAGAGCTGCACACAACGTGTTGGAAGCCTGTGCCCAGACAGAGACAATGGATAAAGTGGTTTTTACTTCCTCAGCAACCGCAGTAGTTTGGAGAGAGGATCGCAAGACCATGGAACTGGATCTGGATGAGAGACATTGGAGTGATGTTAATTTCTGTCGCAAATTCAAGTTATGGCACGGTGTGTCGAAGACAATGGCTGAGAAAAGTGCGTGGGCCTTGGCAATGGATAGAGGAGTAAATATGGTGTCCATCAACGCTGGCTTATTGATGACTCATGATCTCACCATCCAACACCCTTACCTCAGAGGAGCTGCTGAGATGTACGAGGATGGTGTTTTCGTCACCGTTGATTTACCTTTCTTGGTGGATGCCCATATCTGCGTCTACGAAGAAGTCTCATCTTACGGTCGTTATTTGTGTTTTAATCACATCATCAACACCCAAGACGACGCCGTTCAGTTAGCTCAAAAGTTGACTTCCACTGCTGGTTCTTCCTCGTCGTCTTCATCCTCTCCATCGGCGCAAAGTGGTGACCTCGGTAAGGGTTTTATCGAACAGAAAATTAGCAACAAGAAGTTGAACAAATTGATGGTGAACTTTGAAGCTTGA 921 0.4701 MAPSFDTNTQTVCVMDASGHLGFTLVQRLLQRGYTVHASLQKYGDEDLLNGISADSNKLKVFRSDPFDYHSIIEALRGCSGLFYTFEPPHDQPNYDEYMADVEVRAAHNVLEACAQTETMDKVVFTSSATAVVWREDRKTMELDLDERHWSDVNFCRKFKLWHGVSKTMAEKSAWALAMDRGVNMVSINAGLLMTHDLTIQHPYLRGAAEMYEDGVFVTVDLPFLVDAHICVYEEVSSYGRYLCFNHIINTQDDAVQLAQKLTSTAGSSSSSSSSPSAQSGDLGKGFIEQKISNKKLNKLMVNFEA 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9422g00001 306 FunFam Cinnamoyl-CoA reductase-like SNL6 isoform A 4 306 - -
Vium9422g00001 306 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 10 266 - -
Vium9422g00001 306 CDD FR_SDR_e 12 302 - -
Vium9422g00001 306 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 14 172 IPR002225 GO:0003854|GO:0006694|GO:0016616
Vium9422g00001 306 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 262 IPR036291 -
Vium9422g00001 306 Coils Coil 294 306 - -
Vium9422g00001 306 MobiDBLite consensus disorder prediction 265 281 - -
Vium9422g00001 306 Gene3D - 4 306 - -
Vium9422g00001 306 MobiDBLite consensus disorder prediction 265 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9422g00001 Vium-Chr9422 11129 13820 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9422g00001 10 304 Monolignol Biosynthesis Gene Families AT5G58490 31.132 2.43e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9422g00001 - - pvu:PHAVU_002G140100g 565.844